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Editorial: Advances in viromics: new tools, challenges, and data towards characterizing human and environmental viromes.

作者信息

Džunková Mária, Moraru Cristina, Anantharaman Karthik

机构信息

Institute for Integrative Systems Biology, University of Valencia and Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain.

Environmental Metagenomics, Faculty of Chemistry, Research Center One Health Ruhr of the University Alliance Ruhr, University of Duisburg-Essen, Essen, Germany.

出版信息

Front Microbiol. 2023 Sep 26;14:1290062. doi: 10.3389/fmicb.2023.1290062. eCollection 2023.

DOI:10.3389/fmicb.2023.1290062
PMID:37822741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10562684/
Abstract
摘要

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本文引用的文献

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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion.噬菌体-质粒通过感染和溶原性转换传播抗生素抗性基因。
mBio. 2022 Oct 26;13(5):e0185122. doi: 10.1128/mbio.01851-22. Epub 2022 Sep 26.
2
Emerging technologies in the study of the virome.病毒组学研究中的新兴技术。
Curr Opin Virol. 2022 Jun;54:101231. doi: 10.1016/j.coviro.2022.101231. Epub 2022 May 25.
3
Computational Tools for the Analysis of Uncultivated Phage Genomes.用于分析未培养噬菌体基因组的计算工具。
Microbiol Mol Biol Rev. 2022 Jun 15;86(2):e0000421. doi: 10.1128/mmbr.00004-21. Epub 2022 Mar 21.
4
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.GTDB:通过系统发生一致、等级归一化和基于完整基因组的分类学,对细菌和古菌多样性进行持续普查。
Nucleic Acids Res. 2022 Jan 7;50(D1):D785-D794. doi: 10.1093/nar/gkab776.
5
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021.病毒分类学委员会细菌病毒分会和古菌病毒分会:2021 年分类学变更的更新。
Arch Virol. 2021 Nov;166(11):3239-3244. doi: 10.1007/s00705-021-05205-9.
6
Interactions between bacterial and phage communities in natural environments.自然环境中细菌和噬菌体群落的相互作用。
Nat Rev Microbiol. 2022 Jan;20(1):49-62. doi: 10.1038/s41579-021-00602-y. Epub 2021 Aug 9.
7
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages.广泛噬菌体中无机硫辅助代谢的生态学。
Nat Commun. 2021 Jun 9;12(1):3503. doi: 10.1038/s41467-021-23698-5.
8
Identifying viruses from metagenomic data using deep learning.利用深度学习从宏基因组数据中识别病毒。
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9
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.VirSorter2:一种用于检测多种DNA和RNA病毒的多分类器、专家指导方法。
Microbiome. 2021 Feb 1;9(1):37. doi: 10.1186/s40168-020-00990-y.
10
Seeker: alignment-free identification of bacteriophage genomes by deep learning.基于深度学习的噬菌体基因组无比对识别
Nucleic Acids Res. 2020 Dec 2;48(21):e121. doi: 10.1093/nar/gkaa856.