Wu Leilei, Chen Yonglin, Duan Kangying
Spine Surgery, Affiliated Hospital of Weifang Medical University, Weifang, Shandong, China.
Front Pharmacol. 2023 Sep 27;14:1263933. doi: 10.3389/fphar.2023.1263933. eCollection 2023.
In this investigation, we aimed to address the pressing challenge of treating osteosarcoma, a prevalent and difficult-to-treat form of cancer. To achieve this, we developed a quantitative structure-activity relationship (QSAR) model focused on a specific class of compounds called 2-Phenyl-3-(pyridin-2-yl) thiazolidin-4-one derivatives. A set of 39 compounds was thoroughly examined, with 31 compounds assigned to the training set and 8 compounds allocated to the test set randomly. The goal was to predict the IC value of these compounds accurately. To optimize the compounds and construct predictive models, we employed a heuristic method of the CODESSA program. In addition to a linear model using four carefully selected descriptors, we also developed a nonlinear model using the gene expression programming method. The heuristic method resulted in correlation coefficients ( ) of 0.603, 0.482, and 0.107 for R and S, respectively. On the other hand, the gene expression programming method achieved higher and S values of 0.839 and 0.037 in the training set, and 0.760 and 0.157 in the test set, respectively. Both methods demonstrated excellent predictive performance, but the gene expression programming method exhibited greater consistency with experimental values. The successful nonlinear model generated through gene expression programming shows promising potential for designing targeted drugs to combat osteosarcoma effectively. This approach offers a valuable tool for optimizing compound selection and guiding future drug discovery efforts in the battle against osteosarcoma.
在本研究中,我们旨在应对治疗骨肉瘤这一紧迫挑战,骨肉瘤是一种常见且难以治疗的癌症形式。为实现这一目标,我们开发了一种定量构效关系(QSAR)模型,该模型聚焦于一类名为2-苯基-3-(吡啶-2-基)噻唑烷-4-酮衍生物的特定化合物。对一组39种化合物进行了全面研究,随机将31种化合物分配到训练集,8种化合物分配到测试集。目标是准确预测这些化合物的IC值。为了优化化合物并构建预测模型,我们采用了CODESSA程序的启发式方法。除了使用四个精心挑选的描述符构建线性模型外,我们还使用基因表达编程方法开发了非线性模型。启发式方法得出的R和S的相关系数( )分别为0.603、0.482和0.107。另一方面,基因表达编程方法在训练集中的R和S值分别为0.839和0.037,在测试集中分别为0.760和0.157。两种方法均表现出出色的预测性能,但基因表达编程方法与实验值的一致性更高。通过基因表达编程生成的成功非线性模型显示出在有效设计靶向药物对抗骨肉瘤方面具有广阔的潜力。这种方法为优化化合物选择以及指导未来对抗骨肉瘤的药物发现工作提供了有价值的工具。