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用于快速逼近似然函数轮廓的聚类高斯-牛顿方法:在基于生理学的药代动力学模型中的应用。

Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models.

机构信息

Drug Metabolism and Pharmacokinetics, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Laboratory of Quantitative System Pharmacokinetics/Pharmacodynamics, Josai International University, Tokyo, Japan.

出版信息

CPT Pharmacometrics Syst Pharmacol. 2024 Jan;13(1):54-67. doi: 10.1002/psp4.13055. Epub 2023 Oct 18.

Abstract

Physiologically-based pharmacokinetic (PBPK) models can be challenging to work with because they can have too many parameters to identify from observable data. The profile likelihood method can help solve this issue by determining parameter identifiability and confidence intervals, but it involves repetitive parameter optimizations that can be time-consuming. The Cluster Gauss-Newton method (CGNM) is a parameter estimation method that efficiently searches through a wide range of parameter space. In this study, we propose a method that approximates the profile likelihood by reusing intermediate computation results from CGNM, allowing us to obtain the upper bounds of the profile likelihood without conducting additional model evaluation. This method allows us to quickly draw approximate profile likelihoods for all unknown parameters. Additionally, the same approach can be used to draw two-dimensional profile likelihoods for all parameter combinations within seconds. We demonstrate the effectiveness of this method on three PBPK models.

摘要

生理药代动力学(PBPK)模型可能难以处理,因为它们可能有太多的参数需要从可观察的数据中识别。似然函数法可以通过确定参数的可识别性和置信区间来帮助解决这个问题,但它涉及到重复的参数优化,这可能会很耗时。聚类高斯牛顿法(CGNM)是一种参数估计方法,它可以有效地在广泛的参数空间中进行搜索。在这项研究中,我们提出了一种通过重新使用 CGNM 的中间计算结果来逼近似然函数的方法,这样我们就可以在不进行额外模型评估的情况下获得似然函数的上限。该方法允许我们快速绘制所有未知参数的近似似然函数。此外,相同的方法可以在几秒钟内绘制所有参数组合的二维似然函数。我们在三个 PBPK 模型上验证了该方法的有效性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7792/10787206/f2616049f508/PSP4-13-54-g006.jpg

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