Faculty of Computer Engineering, K. N. Toosi University of Technology, Tehran, Iran.
PLoS One. 2023 Oct 20;18(10):e0282624. doi: 10.1371/journal.pone.0282624. eCollection 2023.
Since the beginning of the rapidly spreading COVID-19 pandemic, several mutations have occurred in the genetic sequence of the virus, resulting in emerging different variants of concern. These variants vary in transmissibility, severity of infections, and mortality rate. Designing models that are capable of predicting the future behavior of these variants in the societies can help decision makers and the healthcare system to design efficient health policies, and to be prepared with the sufficient medical devices and an adequate number of personnel to fight against this virus and the similar ones. Among variants of COVID-19, Alpha and Delta variants differ noticeably in the virus structures. In this paper, we study these variants in the geographical regions with different size, population densities, and social life styles. These regions include the country of Iran, the continent of Asia, and the whole world. We propose four deep learning models based on Long Short-Term Memory (LSTM), and examine their predictive power in forecasting the number of infections and deaths for the next three, next five, and next seven days in each variant. These models include Encoder Decoder LSTM (ED-LSTM), Bidirectional LSTM (Bi-LSTM), Convolutional LSTM (Conv-LSTM), and Gated Recurrent Unit (GRU). Performance of these models in predictions are evaluated using the root mean square error, mean absolute error, and mean absolute percentage error. Then, the Friedman test is applied to find the leading model for predictions in all conditions. The results show that ED-LSTM is generally the leading model for predicting the number of infections and deaths for both variants of Alpha and Delta, with the ability to forecast long time intervals ahead.
自 COVID-19 疫情迅速蔓延以来,病毒的基因序列发生了多次突变,导致出现了不同的关注变体。这些变体在传染性、感染严重程度和死亡率方面有所不同。设计能够预测这些变体在社会中未来行为的模型可以帮助决策者和医疗保健系统设计有效的卫生政策,并准备足够的医疗设备和足够数量的人员来对抗这种病毒和类似的病毒。在 COVID-19 的变体中,Alpha 和 Delta 变体在病毒结构上有明显的差异。在本文中,我们研究了这些变体在不同大小、人口密度和社会生活方式的地理区域中的情况。这些地区包括伊朗国家、亚洲大陆和全世界。我们提出了四个基于长短时记忆 (LSTM) 的深度学习模型,并检查了它们在预测未来三天、未来五天和未来七天每个变体的感染和死亡人数方面的预测能力。这些模型包括编码器-解码器 LSTM (ED-LSTM)、双向 LSTM (Bi-LSTM)、卷积 LSTM (Conv-LSTM) 和门控循环单元 (GRU)。使用均方根误差、平均绝对误差和平均绝对百分比误差评估这些模型在预测中的性能。然后,应用 Friedman 检验来找到所有条件下预测的领先模型。结果表明,ED-LSTM 通常是预测 Alpha 和 Delta 变体的感染和死亡人数的领先模型,具有预测未来长时间间隔的能力。