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硼簇的电子密度映射 卷积神经网络以增强结构预测算法。

Electron density mapping of boron clusters convolutional neural networks to augment structure prediction algorithms.

作者信息

Saha Pinaki, Nguyen Minh Tho

机构信息

School of Physics, Engineering and Computer Science, University of Hertfordshire UK.

Laboratory for Chemical Computation and Modelling, Institute for Artificial Intelligence, Van Lang University Ho Chi Minh City Vietnam.

出版信息

RSC Adv. 2023 Oct 19;13(44):30743-30752. doi: 10.1039/d3ra05851d. eCollection 2023 Oct 18.

Abstract

Determination and prediction of atomic cluster structures is an important endeavor in the field of nanoclusters and thereby in materials research. To a large extent the fundamental properties of a nanocluster are mainly governed by its molecular structure. Traditionally, structure elucidation is achieved using quantum mechanics (QM) based calculations that are usually tedious and time consuming for large nanoclusters. Various structural prediction algorithms have been reported in the literature (CALYPSO, USPEX). Although they tend to accelerate the structure exploration, they still require the aid of QM based calculations for structure evaluation. This makes the structure prediction process quite a computationally expensive affair. In this paper, we report on the creation of a convolutional neural network model, which can give relatively accurate energies for the ground state of nanoclusters from the promolecule density on the fly and could thereby be utilized for aiding structure prediction algorithms. We tested our model on dataset consisting of pure boron nanoclusters of varying sizes.

摘要

确定和预测原子团簇结构是纳米团簇领域乃至材料研究中的一项重要工作。在很大程度上,纳米团簇的基本性质主要由其分子结构决定。传统上,结构解析是通过基于量子力学(QM)的计算来实现的,对于大型纳米团簇来说,这些计算通常既繁琐又耗时。文献中报道了各种结构预测算法(CALYPSO、USPEX)。尽管它们倾向于加速结构探索,但仍需要基于QM的计算来辅助结构评估。这使得结构预测过程在计算上相当昂贵。在本文中,我们报告了一个卷积神经网络模型的创建,该模型可以根据即时的前分子密度为纳米团簇的基态给出相对准确的能量,从而可用于辅助结构预测算法。我们在由不同尺寸的纯硼纳米团簇组成的数据集上测试了我们的模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03f3/10586239/71fe1f2accb5/d3ra05851d-f1.jpg

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