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时间力控制着来自综合多营养层次水产养殖系统中与绿藻纲相关的微生物群落组装。

Temporal force governs the microbial assembly associated with (Chlorophyta) from an integrated multi-trophic aquaculture system.

作者信息

Nguyen Dzung, Ovadia Ofer, Guttman Lior

机构信息

Marine Biology and Biotechnology Program, Department of Life Sciences, Ben-Gurion University of the Negev, Eilat, Israel.

Israel Oceanographic and Limnological Research, The National Center for Mariculture, Eilat, Israel.

出版信息

Front Microbiol. 2023 Oct 5;14:1223204. doi: 10.3389/fmicb.2023.1223204. eCollection 2023.

Abstract

., one of the most important providers of marine ecosystem services, has gained substantial attention lately in both ecological and applicational aspects. It is known that macroalgae and their associated microbial community form an inseparable unit whose intimate relationship can affect the wellbeing of both. Different cultivation systems, such as integrated multi-trophic aquaculture (IMTA), are assumed to impact bacterial community significantly in terms of compositional guilds. However, in such a highly dynamic environment, it is crucial to determine how the community dynamics change over time. In the current study, we characterized the microbiota associated with grown as a biofilter in an IMTA system in the Gulf of Aqaba (Eilat, Israel) over a developmental period of 5 weeks. The -associated microbial community was identified using the 16S rRNA gene amplicon sequencing technique, and ecological indices were further analyzed. The -associated microbiome revealed a swift change in composition along the temporal succession, with clusters of distinct communities for each timepoint. , and , the most abundant phyla that accounted for up to 95% of all the amplicon sequence variants (ASVs) found, appeared in all weeks. Further analyses highlighted microbial biomarkers representing each timepoint and their characteristics. Finally, the presence of highly abundant species in microbiota yet underestimated in previous research (such as phyla , families , and ) suggests that more attention should be paid to the temporal succession of the assembly of microbes inhabiting macroalgae in aquaculture, in general, and IMTA, in particular. Characterizing bacterial communities associated with from an IMTA system provided a better understanding of their associated microbial dynamics and revealed this macroalgae's adaptation to such a habitat.

摘要

作为海洋生态系统服务的最重要提供者之一,近来在生态和应用方面都受到了广泛关注。众所周知,大型海藻及其相关的微生物群落形成了一个不可分割的单元,它们之间的紧密关系会影响双方的健康状况。不同的养殖系统,如综合多营养层次水产养殖(IMTA),被认为会在组成类别方面对细菌群落产生显著影响。然而,在这样一个高度动态的环境中,确定群落动态如何随时间变化至关重要。在本研究中,我们对红海亚喀巴湾(以色列埃拉特)一个IMTA系统中作为生物过滤器生长的[大型海藻名称]相关的微生物群落在5周的发育期间进行了特征描述。使用16S rRNA基因扩增子测序技术鉴定了与[大型海藻名称]相关的微生物群落,并进一步分析了生态指标。与[大型海藻名称]相关的微生物组显示,其组成沿时间演替迅速变化,每个时间点都有不同群落的聚类。[具体门名称1]和[具体门名称2]是最丰富的门,占所有发现的扩增子序列变体(ASV)的95%,在所有周都出现。进一步的分析突出了代表每个时间点的微生物生物标志物及其特征。最后,[大型海藻名称]微生物群中存在先前研究中被低估的高度丰富的物种(如[具体门名称3]、[具体科名称]和[具体科名称]),这表明一般而言,特别是在IMTA中,应更多地关注水产养殖中栖息在大型海藻上的微生物组装的时间演替。对IMTA系统中与[大型海藻名称]相关的细菌群落进行特征描述,有助于更好地理解其相关的微生物动态,并揭示这种大型海藻对这种栖息地的适应性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5482/10585273/3f783b488547/fmicb-14-1223204-g0001.jpg

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