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sp. nov.,从家猪的盲肠内容物中分离得到()。

sp. nov., isolated from caecal contents of domestic pigs ().

机构信息

University of Ljubljana, Veterinary Faculty, Institute of Microbiology and Parasitology, Ljubljana, Slovenia.

University of Ljubljana, Biotechnical Faculty, Department of Biology, Ljubljana, Slovenia.

出版信息

Int J Syst Evol Microbiol. 2023 Oct;73(10). doi: 10.1099/ijsem.0.006108.

Abstract

During the 2021 European Food Safety Authority coordinated harmonized monitoring of antimicrobial resistance in species in Slovenia, five -like strains were cultured from caeca of a total of 104 domestic pigs that could not be identified using the standard-prescribed biochemical tests or MALDI-TOF MS. The isolates were obtained using the standard ISO 10272 procedure for the isolation of thermotolerant with prolonged cultivation time. Small -like colonies were observed on mCCDA and CASA agar plates after 2-4 days of incubation; dark-field microscopy revealed relatively big spirilli-shaped bacteria exhibiting characteristic -like motility. The cells were 1.5-3 µm long and 0.5-0.7 µm wide, Gram-negative, oxidase-positive and catalase-positive. MALDI-TOF mass spectra were distinctive and consistent, but with low MALDI-TOF MS log scores and the closest matches being those of and . All five strains underwent whole-genome sequencing. Analysis of 16S rRNA gene sequences revealed that the isolates were most similar (98.3-98.4 % identity) to . Pairwise average nucleotide identity (ANI) values revealed that the five studied strains shared pairwise ANI of 96.2-96.5 % but were clearly distinct from the previously described species (ANI ≤72.8 %). The core genome-based phylogeny confirmed that the new strains form a distinct and well-supported clade within the genus . The conducted polyphasic taxonomic analysis confirmed that the five strains represent a novel species for which the name sp. nov. is suggested, with strain 46386 (=DSM 115534=CCUG 76865) as the type strain.

摘要

在 2021 年欧洲食品安全局协调的对斯洛文尼亚物种的抗微生物药物耐药性进行的联合监测中,从总共 104 头无法通过标准规定的生化试验或 MALDI-TOF MS 鉴定的国内猪的盲肠中培养出了五株类似的菌株。这些分离株是使用标准 ISO 10272 程序从延长培养时间的耐热 中分离出来的。在孵育 2-4 天后,在 mCCDA 和 CASA 琼脂平板上观察到小的类似菌落;暗场显微镜显示出相对较大的螺旋形细菌,表现出特征性的运动性。细胞长 1.5-3 µm,宽 0.5-0.7 µm,革兰氏阴性,氧化酶阳性,过氧化氢酶阳性。MALDI-TOF 质谱独特且一致,但 MALDI-TOF MS 对数评分较低,最接近的匹配是 和 。所有五株菌均进行了全基因组测序。16S rRNA 基因序列分析表明,分离株与 最为相似(98.3-98.4%的同一性)。成对平均核苷酸同一性(ANI)值表明,五种研究菌株的 ANI 为 96.2-96.5%,但与先前描述的 种明显不同(ANI ≤72.8%)。基于核心基因组的系统发育分析证实,新菌株在属内形成一个独特且支持良好的分支。进行的多相分类学分析证实,这五种菌株代表了一种新型的 种,建议使用 sp. nov. 作为其名称,其中菌株 46386(=DSM 115534=CCUG 76865)作为模式株。

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