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通过分析来自北达科他州废水样本中的严重急性呼吸综合征冠状病毒2(SARS-CoV-2)RNA拷贝数来估计新冠病毒病(COVID-19)病例的流行率。

Estimating the prevalence of COVID-19 cases through the analysis of SARS-CoV-2 RNA copies derived from wastewater samples from North Dakota.

作者信息

Choi Bong-Jin, Hoselton Scott, Njau Grace N, Idamawatta I G C G, Carson Paul, McEvoy John

机构信息

Department of Statistics and Department of Public Health, North Dakota State University, United States of America.

Department of Microbiological Sciences, North Dakota State University, United States of America.

出版信息

Glob Epidemiol. 2023 Oct 12;6:100124. doi: 10.1016/j.gloepi.2023.100124. eCollection 2023 Dec.

Abstract

The SARS-CoV-2 virus was first detected in December 2019, which prompted many researchers to investigate how the virus spreads. SARS-CoV-2 is mainly transmitted through respiratory droplets. Symptoms of the SARS-CoV-2 virus appear after an incubation period. Moreover, the asymptomatic infected individuals unknowingly spread the virus. Detecting infected people requires daily tests and contact tracing, which are expensive. The early detection of infectious diseases, including COVID-19, can be achieved with wastewater-based epidemiology, which is timely and cost-effective. In this study, we collected wastewater samples from wastewater treatment plants in several cities in North Dakota and then extracted viral RNA copies. We used log-RNA copies in the model to predict the number of infected cases using Quantile Regression (QR) and K-Nearest Neighbor (KNN) Regression. The model's performance was evaluated by comparing the Mean Absolute Percentage Error (MAPE). The QR model performs well in cities where the population is >. In addition, the model predictions were compared with the basic Susceptible-Infected-Recovered (SIR) model which is the golden standard model for infectious diseases.

摘要

严重急性呼吸综合征冠状病毒2(SARS-CoV-2)病毒于2019年12月首次被发现,这促使许多研究人员去调查该病毒的传播方式。SARS-CoV-2主要通过呼吸道飞沫传播。SARS-CoV-2病毒的症状在潜伏期后出现。此外,无症状感染者会在不知不觉中传播病毒。检测感染者需要进行日常检测和接触者追踪,这成本高昂。包括新型冠状病毒肺炎(COVID-19)在内的传染病的早期检测可以通过基于废水的流行病学方法来实现,这种方法既及时又具有成本效益。在本研究中,我们从北达科他州几个城市的污水处理厂收集了废水样本,然后提取病毒RNA拷贝数。我们在模型中使用对数RNA拷贝数,通过分位数回归(QR)和K近邻(KNN)回归来预测感染病例数。通过比较平均绝对百分比误差(MAPE)来评估模型的性能。QR模型在人口大于[具体数值]的城市中表现良好。此外,还将模型预测结果与基本的易感-感染-康复(SIR)模型进行了比较,SIR模型是传染病的金标准模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32f0/10594563/627c6bc4ab51/gr1a.jpg

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