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荷兰疫情早期污水中严重急性呼吸综合征冠状病毒2(SARS-CoV-2)RNA的存在及其与报告的COVID-19患病率的相关性

Presence of SARS-Coronavirus-2 RNA in Sewage and Correlation with Reported COVID-19 Prevalence in the Early Stage of the Epidemic in The Netherlands.

作者信息

Medema Gertjan, Heijnen Leo, Elsinga Goffe, Italiaander Ronald, Brouwer Anke

机构信息

KWR Water Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands.

出版信息

Environ Sci Technol Lett. 2020 May 20;7(7):511-516. doi: 10.1021/acs.estlett.0c00357. eCollection 2020 Jul 14.

DOI:10.1021/acs.estlett.0c00357
PMID:37566285
Abstract

In the current COVID-19 pandemic, a significant proportion of cases shed SARS-Coronavirus-2 (SARS-CoV-2) with their faeces. To determine if SARS-CoV-2 RNA was present in sewage during the emergence of COVID-19 in The Netherlands, sewage samples of six cities and the airport were tested using four qRT-PCR assays, three targeting the nucleocapsid gene (N1-N3) and one the envelope gene (E). No SARS-CoV-2 RNA was detected on February 6, 3 weeks before the first Dutch case was reported. On March 4/5, one or more gene fragments were detected in sewage of three sites, in concentrations of 2.6-30 gene copies per mL. In Amersfoort, N3 was detected in sewage 6 days before the first cases were reported. As the prevalence of COVID-19 in these cities increased in March, the RNA signal detected by each qRT-PCR assay increased, for N1-N3 up to 790-2200 gene copies per mL. This increase correlated significantly with the increase in reported COVID-19 prevalence. The detection of the virus RNA in sewage, even when the COVID-19 prevalence is low, and the correlation between concentration in sewage and reported prevalence of COVID-19, indicate that sewage surveillance could be a sensitive tool to monitor the circulation of the virus in the population.

摘要

在当前的新冠疫情中,相当一部分病例的粪便中排出严重急性呼吸综合征冠状病毒2(SARS-CoV-2)。为确定在荷兰新冠疫情出现期间污水中是否存在SARS-CoV-2 RNA,使用四种定量逆转录聚合酶链反应(qRT-PCR)检测方法对六个城市及机场的污水样本进行了检测,其中三种方法针对核衣壳基因(N1 - N3),一种针对包膜基因(E)。在荷兰报告首例病例前三周的2月6日,未检测到SARS-CoV-2 RNA。3月4日/5日,在三个地点的污水中检测到一个或多个基因片段,浓度为每毫升2.6 - 30个基因拷贝。在阿默斯福特,在报告首例病例的6天前,污水中检测到了N3。随着3月这些城市新冠疫情患病率的上升,每种qRT-PCR检测方法检测到的RNA信号都有所增加,N1 - N3的信号增加到每毫升790 - 2200个基因拷贝。这种增加与报告的新冠疫情患病率的增加显著相关。即使在新冠疫情患病率较低时污水中也能检测到病毒RNA,以及污水中病毒浓度与报告的新冠疫情患病率之间的相关性,表明污水监测可能是监测病毒在人群中传播的一种灵敏工具。

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