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属名.新种,是候选科 env.OPS 17 家族的第一个特征代表,提议科名.新属

gen. nov., sp. nov., the first characterized representative of the candidate family env.OPS 17 and proposal of fam. nov.

机构信息

Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.

Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.

出版信息

Int J Syst Evol Microbiol. 2023 Oct;73(10). doi: 10.1099/ijsem.0.006134.

Abstract

16S rRNA sequence types associated with the candidate family env.OPS 17 have been reported from various environments, but no representatives have been characterized and validly named. Bacteria of env.OPS 17 are affiliated with the order and were first detected more than two decades ago in the vicinity of a thermal spring in Yellowstone National Park. Strain Swamp196, isolated from the soil surrounding a swamp in Northern Germany, is the first characterized representative of candidate family env.OPS 17. Cells of strain Swamp196 are rod-shaped, non-motile, non-spore-forming, non-capsulated and stain Gram-negative. Colonies are small and orange-coloured. The strain is mesophilic and grows under aerobic or microaerophilic conditions. It grows chemo-organotrophically over a narrow range of pH and exclusively on proteinaceous substrates. The major cellular fatty acids are iso-C, iso-C 10, C 9 and C 7 and the major polar lipids are two unidentified aminophospholipids, one unidentified aminolipid and one unidentified lipid. The predominant respiratory quinone is MK-7. The DNA G+C content of genomic DNA is 35.5 mol%. Strain Swamp196 is related to AR-3-17, Hh36 and Dae 13 with 16S rRNA gene sequence similarity of 84.1, 83.8 and 83.5 %, respectively. Based on our phenotypic, genomic and phylogenetic analysis, we propose the novel species sp. nov (type strain Swamp196=DSM 105849=CECT 30420) of the novel genus gen. nov. and the novel family fam. nov.

摘要

与候选科 env.OPS 17 相关的 16S rRNA 序列型已在各种环境中报道,但尚未对其进行特征描述和有效命名。env.OPS 17 中的细菌隶属于目 ,二十多年前首次在黄石国家公园附近的温泉附近检测到。从德国北部沼泽地周围土壤中分离出的菌株 Swamp196 是候选科 env.OPS 17 的第一个特征代表。菌株 Swamp196 的细胞呈杆状,不运动,不产芽孢,不形成荚膜,革兰氏染色阴性。菌落小,呈橙色。该菌株是中温型的,在需氧或微需氧条件下生长。它在较窄的 pH 范围内以化学有机营养生长,并且仅在蛋白质底物上生长。主要细胞脂肪酸是 iso-C、iso-C 10、C 9 和 C 7,主要极性脂是两种未鉴定的氨基磷脂、一种未鉴定的氨基脂和一种未鉴定的脂。主要呼吸醌是 MK-7。基因组 DNA 的 G+C 含量为 35.5 mol%。菌株 Swamp196 与 AR-3-17、Hh36 和 Dae 13 具有 84.1%、83.8%和 83.5%的 16S rRNA 基因序列相似性,分别为 AR-3-17、Hh36 和 Dae 13。基于我们的表型、基因组和系统发育分析,我们提出了一种新的种 sp. nov(模式菌株 Swamp196=DSM 105849=CECT 30420),属于新属 gen. nov. 和新科 fam. nov.

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