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利用机器学习对肾小球疾病中的基因预测、优先级排序、相互作用及其验证进行-值表达与本体的调整。

Adjustment of -value expression to ontology using machine learning for genetic prediction, prioritization, interaction, and its validation in glomerular disease.

作者信息

Ettetuani Boutaina, Chahboune Rajaa, Moussa Ahmed

机构信息

Systems and Data Engineering Team, National School of Applied Sciences, Abdelmalek Essaadi University, Tétouan, Morocco.

Life and Health Sciences Team, Faculty of Medicine and Pharmacy, Abdelmalek Essaadi University, Tétouan, Morocco.

出版信息

Front Genet. 2023 Oct 12;14:1215232. doi: 10.3389/fgene.2023.1215232. eCollection 2023.

DOI:10.3389/fgene.2023.1215232
PMID:37900183
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10603191/
Abstract

The results of gene expression analysis based on -value can be extracted and sorted by their absolute statistical significance and then applied to multiple similarity scores of their gene ontology (GO) terms to promote the combination and adjustment of these scores as essential predictive tasks for understanding biological/clinical pathways. The latter allows the possibility to assess whether certain aspects of gene function may be associated with other varieties of genes, to evaluate regulation, and to link them into networks that prioritize candidate genes for classification by applying machine learning techniques. We then detect significant genetic interactions based on our algorithm to validate the results. Finally, based on specifically selected tissues according to their normalized gene expression and frequencies of occurrence from their different biological and clinical inputs, a reported classification of genes under the subject category has validated the abstract (glomerular diseases) as a case study.

摘要

基于 - 值的基因表达分析结果可以根据其绝对统计显著性进行提取和排序,然后应用于其基因本体(GO)术语的多个相似性得分,以促进这些得分的组合和调整,作为理解生物学/临床途径的重要预测任务。后者使得有可能评估基因功能的某些方面是否可能与其他种类的基因相关联,评估调控,并通过应用机器学习技术将它们链接到对候选基因进行分类的优先网络中。然后,我们基于我们的算法检测显著的基因相互作用以验证结果。最后,根据从不同生物学和临床输入中归一化的基因表达及其出现频率特别选择的组织,对主题类别下的基因进行报告分类,已将摘要(肾小球疾病)作为案例研究进行了验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/4e6a45541aae/fgene-14-1215232-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/7763a5e38602/fgene-14-1215232-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/e18773591cf4/fgene-14-1215232-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/2721b5999a6c/fgene-14-1215232-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/54ed6b2d1231/fgene-14-1215232-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/4e6a45541aae/fgene-14-1215232-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/7763a5e38602/fgene-14-1215232-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/e18773591cf4/fgene-14-1215232-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/2721b5999a6c/fgene-14-1215232-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/54ed6b2d1231/fgene-14-1215232-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b90/10603191/4e6a45541aae/fgene-14-1215232-g005.jpg

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