Dai Yifan, Zhou Zhengqing, Kim Kyeri, Rivera Nelson, Mohammed Javid, Hsu-Kim Heileen, Chilkoti Ashutosh, You Lingchong
Department of Biomedical Engineering, Duke University, Durham, NC, 27708.
Department of Biomedical Engineering, Center for Biomolecular Condensates, Washington University in St. Louis, Saint Louis, MO, 63130.
bioRxiv. 2023 Oct 20:2023.10.19.563018. doi: 10.1101/2023.10.19.563018.
Control of the electrochemical environment in living cells is typically attributed to ion channels. Here we show that the formation of biomolecular condensates can modulate the electrochemical environment in cells, which affects processes globally within the cell and interactions of the cell with its environment. Condensate formation results in the depletion or enrichment of certain ions, generating intracellular ion gradients. These gradients directly affect the electrochemical properties of a cell, including the cytoplasmic pH and hyperpolarization of the membrane potential. The modulation of the electrochemical equilibria between the intra- and extra-cellular environments by biomolecular condensates governs charge-dependent uptake of small molecules by cells, and thereby directly influences bacterial survival under antibiotic stress. The shift of the intracellular electrochemical equilibria by condensate formation also drives a global change of the gene expression profile. The control of the cytoplasmic environment by condensates is correlated with their volume fraction, which can be highly variable between cells due to the stochastic nature of gene expression at the single cell level. Thus, condensate formation can amplify cell-cell variability of the environmental effects induced by the shift of cellular electrochemical equilibria. Our work reveals new biochemical functions of condensates, which extend beyond the biomolecules driving and participating in condensate formation, and uncovers a new role of biomolecular condensates in cellular regulation.
活细胞中电化学环境的控制通常归因于离子通道。在这里,我们表明生物分子凝聚物的形成可以调节细胞内的电化学环境,这会影响细胞内的全局过程以及细胞与其环境的相互作用。凝聚物的形成导致某些离子的耗尽或富集,从而产生细胞内离子梯度。这些梯度直接影响细胞的电化学性质,包括细胞质pH值和膜电位的超极化。生物分子凝聚物对细胞内外环境之间电化学平衡的调节控制着细胞对小分子的电荷依赖性摄取,从而直接影响细菌在抗生素胁迫下的存活。凝聚物形成导致的细胞内电化学平衡的改变也驱动了基因表达谱的全局变化。凝聚物对细胞质环境的控制与其体积分数相关,由于单细胞水平基因表达的随机性,不同细胞之间的体积分数可能有很大差异。因此,凝聚物的形成可以放大细胞电化学平衡变化所诱导的环境效应的细胞间变异性。我们的工作揭示了凝聚物新的生化功能,其作用超出了驱动和参与凝聚物形成的生物分子,并揭示了生物分子凝聚物在细胞调节中的新作用。