State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, PR China.
Int J Syst Evol Microbiol. 2023 Nov;73(11). doi: 10.1099/ijsem.0.006122.
A novel bacterial strain, designated as PHS-Z3, was isolated from a marine sponge belonging to the genus on the Puerto Galera Deep Monkey, Philippines. Cells of PHS-Z3 were Gram-stain-positive, motile, oxidase- and catalase-positive, white-pigmented, spore-forming, short rods that could grow at 10-40 °C (optimum, 20 °C), pH 6.0-9.5 (optimum, pH 7.5) and with 2-16 % (w/v) NaCl (optimum, 7 %). The 16S rRNA gene sequence of PHS-Z3 showed 97.9 %, 96.7 %, and 96.2 % identities to C/2, DT7-4 and RC11, respectively. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that PHS-Z3 formed an independent cluster with C/2. The total genome of PHS-Z3 was approximately 7 613 364 bp in size with a DNA G+C content of 51.6 %. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between PHS-Z3 and other type strains of species of the genus were 68.0-81.4 % [ANI by blast (ANIb)], 83.0-88.0 % [ANI by MUMmer (ANIm)] and 12.7-32.1 % (dDDH). The dDDH and ANI values were below the standard cut-off criteria for delineation of bacterial species. The percentage of conserved proteins (POCP) values between the genome of PHS-Z3 and those of members of the genus were 39.7-75.7 %, while the average amino acid identity (AAI) values were 55.9-83.7 %. The sole respiratory quinone in the strain was MK-7, and the predominant fatty acids were anteiso-C and C. The major polar lipids of PHS-Z3 consisted of diphosphatidylglycerol, phospholipid and phosphatidylglycerol. The characteristic amino acid in the cell wall of PHS-Z3 was diamino heptanoic acid (-DAP). On the basis of the molecular, physiological, biochemical and chemotaxonomic features, strain PHS-Z3 represents a novel species of the genus , for which the name sp. nov. is proposed, with the type strain PHS-Z3 (=MCCC 1K07848=KCTC 43443).
一种新型的细菌菌株,命名为 PHS-Z3,从属于菲律宾 Puerto Galera Deep Monkey 的海绵属中分离出来。PHS-Z3 细胞革兰氏阳性,运动,氧化酶和过氧化氢酶阳性,白色素,产孢子,短杆状,可以在 10-40°C(最佳,20°C),pH 值 6.0-9.5(最佳,pH 值 7.5)和 2-16%(w/v)NaCl(最佳,7%)中生长。PHS-Z3 的 16S rRNA 基因序列与 C/2、DT7-4 和 RC11 的相似度分别为 97.9%、96.7%和 96.2%。基于 16S rRNA 基因序列的系统发育分析结果表明,PHS-Z3 与 C/2 形成一个独立的聚类。PHS-Z3 的全基因组大小约为 7,613,364bp,DNA G+C 含量为 51.6%。PHS-Z3 与其他属种的模式菌株之间的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值分别为 68.0-81.4%(ANI 通过 blast(ANIb))、83.0-88.0%(ANI 通过 MUMmer(ANIm))和 12.7-32.1%(dDDH)。dDDH 和 ANI 值低于细菌种系划分的标准截止值。PHS-Z3 基因组与属成员之间的保守蛋白百分比(POCP)值为 39.7-75.7%,而平均氨基酸同一性(AAI)值为 55.9-83.7%。该菌株唯一的呼吸醌为 MK-7,主要脂肪酸为 anteiso-C 和 C。PHS-Z3 的主要极性脂由双磷脂酰甘油、磷脂和磷脂酰甘油组成。PHS-Z3 细胞壁中的特征氨基酸为二氨基庚二酸(-DAP)。基于分子、生理、生化和化学分类特征,菌株 PHS-Z3 代表了属的一个新种,提议使用新种名 sp. nov.,其模式菌株为 PHS-Z3(=MCCC 1K07848=KCTC 43443)。