Zhang Mimi, Song Qianqian, Sang Jin, Li Zhiyong
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, PR China.
Int J Syst Evol Microbiol. 2023 May;73(5). doi: 10.1099/ijsem.0.005869.
A novel bacterial strain, designated as WHS-Z9, was isolated from marine sponge sp. collected from Weihai (37° 25' N, 121° 58' E), Shandong Province, PR China. Cells of strain WHS-Z9 were Gram-stain-positive, non-spore-forming, non-motile, short-rod-shaped and light yellow-pigmented. The strain could grow at 10-40 °C (optimum, 20 °C), pH 4.5-9.5 (optimum, pH 8.5) and 2-14 % (w/v) NaCl (optimum, 4 %). The 16S rRNA gene sequence of strain WHS-Z9 showed 98.7 % similarity to that of NBRC 14811, 98.5 % to FXJ8.269 and 98.4 % to BBH7. The phylogenetic tree based on 16S rRNA gene sequences revealed that strain WHS-Z9 was clustered with o2. The whole genome of WHS-Z9 was approximately 4 217 721 bp in size with a G+C content of 65.2 %. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values among WHS-Z9 and other type strains were 83.3-85.5 % (ANI based on blast), 86.4-87.9 % (ANI based on MUMmer) and 41.9-57.5 % (dDDH). Percentage of conserved protein values between the genomes of strain WHS-Z9 and members of genera were 76.8-82.9 %, while the average amino acid identity (AAI) values were 83.7-87.0 %. The dDDH, ANI, AAI and POCP values were below the standard cut-off criteria for the delineation of bacterial species. The sole respiratory quinone in strain WHS-Z9 was MK-8(H), and the predominant fatty acids were anteiso-C and anteiso-C. The major polar lipids of WHS-Z9 consisted of diphosphatidylglycerol and glycolipid. The diagnostic cell-wall diamino acid of strain WHS-Z9 was -diaminopimelic acid. Based on the data obtained in this study, strain WHS-Z9 (=MCCC 1K07845=KCTC 49848) should be classified as the type strain of a novel species of the genus , for which the name sp. nov. is proposed.
从中国山东省威海市(北纬37°25′,东经121°58′)采集的海洋海绵中分离出一株新型细菌菌株,命名为WHS-Z9。WHS-Z9菌株的细胞革兰氏染色呈阳性,不形成芽孢,无运动性,呈短杆状,具有浅黄色色素。该菌株可在10-40℃(最适温度为20℃)、pH 4.5-9.5(最适pH为8.5)和2-14%(w/v)NaCl(最适浓度为4%)的条件下生长。WHS-Z9菌株的16S rRNA基因序列与日本模式培养物集存机构14811的序列相似度为98.7%,与FXJ8.269的相似度为98.5%,与BBH7的相似度为98.4%。基于16S rRNA基因序列构建的系统发育树显示,WHS-Z9菌株与o2聚类。WHS-Z9的全基因组大小约为4217721bp,G+C含量为65.2%。WHS-Z9与其他模式菌株之间的平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)值分别为83.3-85.5%(基于blast的ANI)、86.4-87.9%(基于MUMmer的ANI)和41.9-57.5%(dDDH)。WHS-Z9菌株基因组与各属成员之间的保守蛋白百分比值为76.8-82.9%,而平均氨基酸同一性(AAI)值为83.7-87.0%。dDDH、ANI、AAI和POCP值均低于细菌物种划分的标准临界值。WHS-Z9菌株唯一的呼吸醌为MK-8(H),主要脂肪酸为anteiso-C和anteiso-C。WHS-Z9的主要极性脂类由双磷脂酰甘油和糖脂组成。WHS-Z9菌株诊断性细胞壁二氨基酸为-L-二氨基庚二酸。基于本研究获得的数据,WHS-Z9菌株(=MCCC 1K07845=KCTC 49848)应被归类为该属一个新物种的模式菌株,为此提议将其命名为sp. nov.。