Zhuang Lingping, Lin Binbin, Xu Li, Li Guoqiang, Wu Chang-Jer, Luo Lianzhong
Xiamen Key Laboratory of Marine Medicinal Natural Products Resources, Xiamen Medica College, Xiamen, 361023, PR China.
Fujian Province University Technology and Engineering Center for Marine Biomedical Resource Utilization, Xiamen Medical College, Xiamen, 361023, PR China.
Int J Syst Evol Microbiol. 2019 Apr;69(4):1111-1116. doi: 10.1099/ijsem.0.003278. Epub 2019 Feb 12.
A taxonomic study was carried out on strain HN-E23, which was isolated from sponge collected from Yangpu Bay, Hainan, China. Cells of strain HN-E23 were Gram-stain-negative, non-motile, orange-yellow-pigmented, short rods, that could grow at 10-40 °C (optimum, 28 °C), at pH 5-11 (optimun, pH 7) and in 0.5-12 % (w/v) NaCl (optimum, 3 %). This isolate was positive for oxidase, catalase, and the hydrolysis of aesculin, but negative for indole production and the reduction of nitrate. The phylogenetic tree based on 16S rRNA gene sequences revealed that strain HN-E23 formed a distinct phylogenetic lineage within the cluster comprising Erythrobacter strains. Strain HN-E23 shared the highest 16S rRNA gene sequence similarity to Erythrobacter aquimixticola JSSK-14 (97.2 %), followed by Erythrobacter atlanticus s21-N3 (96.6 %), Erythrobacter luteus KA37 (96.5 %) and Erythrobacter citreus RE35F/1 (96.4 %). The digital DNA-DNA hybridization (dDDH) and the average nucleotide identity (ANI) values between strain HN-E23 and JSSK-14 were 18.8 and 74.9 %, respectively. The dDDH and ANI values are below the standard cut-off criteria for delineation of bacterial species. The dominant fatty acids were summed feature 8 (C18 : 1ω7c/ω6c), C16 : 0 and summed feature 3 (C16 : 1ω7c/ω6c). The major polar lipids comprised phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, sphingoglycolipid, an unidentified glycolipid and six unidentified lipids. The respiratory lipoquinone was identified as Q-10. The G+C content of the genomic DNA was 65.5 mol%. Based on the phenotypic and phylogenetic data, strain HN-E23 represents a novel species of the genus Erythrobacter, for which the name Erythrobacter spongiae sp. nov. is proposed, with the type strain HN-E23 (=MCCC 1K03331=LMG 30457).
对从中国海南杨浦湾采集的海绵中分离得到的菌株HN-E23进行了分类学研究。菌株HN-E23的细胞革兰氏染色阴性,无运动性,呈橙黄色,为短杆菌,可在10-40°C(最适温度28°C)、pH 5-11(最适pH 7)和0.5-12%(w/v)NaCl(最适浓度3%)条件下生长。该分离株氧化酶、过氧化氢酶和七叶苷水解试验呈阳性,但吲哚产生试验和硝酸盐还原试验呈阴性。基于16S rRNA基因序列构建的系统发育树显示,菌株HN-E23在包含红杆菌属菌株的簇内形成了一个独特的系统发育分支。菌株HN-E23与混盐水红杆菌JSSK-14的16S rRNA基因序列相似度最高(97.2%),其次是大西洋红杆菌s21-N3(96.6%)、浅红球菌KA37(96.5%)和柠檬红杆菌RE35F/1(96.4%)。菌株HN-E23与JSSK-14之间的数字DNA-DNA杂交(dDDH)值和平均核苷酸同一性(ANI)值分别为18.8%和74.9%。dDDH值和ANI值低于细菌物种划分的标准临界值。主要脂肪酸为特征性总和8(C18:1ω7c/ω6c)、C16:0和特征性总和3(C16:1ω7c/ω6c)。主要极性脂类包括磷脂酰乙醇胺、二磷脂酰甘油、磷脂酰甘油、磷脂酰胆碱、鞘糖脂、一种未鉴定的糖脂和六种未鉴定的脂类。呼吸醌被鉴定为Q-10。基因组DNA的G+C含量为65.5 mol%。基于表型和系统发育数据,菌株HN-E23代表红杆菌属的一个新物种,为此提出新名称海绵红杆菌(Erythrobacter spongiae sp. nov.),模式菌株为HN-E23(=MCCC 1K03331=LMG 30457)。