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Vesiclepedia 2024:一个细胞外囊泡和细胞外颗粒数据库。

Vesiclepedia 2024: an extracellular vesicles and extracellular particles repository.

机构信息

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.

出版信息

Nucleic Acids Res. 2024 Jan 5;52(D1):D1694-D1698. doi: 10.1093/nar/gkad1007.

Abstract

Vesiclepedia (http://www.microvesicles.org) is a free web-based compendium of DNA, RNA, proteins, lipids and metabolites that are detected or associated with extracellular vesicles (EVs) and extracellular particles (EPs). EVs are membranous vesicles that are secreted ubiquitously by cells from all domains of life from archaea to eukaryotes. In addition to EVs, it was reported recently that EPs like exomeres and supermeres are secreted by some mammalian cells. Both EVs and EPs contain proteins, nucleic acids, lipids and metabolites and has been proposed to be implicated in several key biological functions. Vesiclepedia catalogues proteins, DNA, RNA, lipids and metabolites from both published and unpublished studies. Currently, Vesiclepedia contains data obtained from 3533 EV studies, 50 550 RNA entries, 566 911 protein entries, 3839 lipid entries, 192 metabolite and 167 DNA entries. Quantitative data for 62 822 entries from 47 EV studies is available in Vesiclepedia. The datasets available in Vesiclepedia can be downloaded as tab-delimited files or accessible through the FunRich-based Vesiclepedia plugin.

摘要

Vesiclepedia(http://www.microvesicles.org)是一个免费的基于网络的综合性数据库,收录了与细胞外囊泡(EVs)和细胞外颗粒(EPs)相关的 DNA、RNA、蛋白质、脂类和代谢物。EVs 是由所有生命领域的细胞(从古菌到真核生物)普遍分泌的具有膜结构的囊泡。除了 EVs,最近有报道称,一些哺乳动物细胞也会分泌像外泌体和超大囊泡这样的 EPs。EVs 和 EPs 都含有蛋白质、核酸、脂类和代谢物,被认为与多种关键的生物学功能有关。Vesiclepedia 对来自已发表和未发表研究的蛋白质、DNA、RNA、脂类和代谢物进行了编目。目前,Vesiclepedia 包含了 3533 项 EV 研究、50550 个 RNA 条目、566911 个蛋白质条目、3839 个脂类条目、192 个代谢物和 167 个 DNA 条目的数据。在 Vesiclepedia 中,有 47 项 EV 研究的 62822 个定量数据可用。Vesiclepedia 中的数据集可以下载为制表符分隔文件,也可以通过基于 FunRich 的 Vesiclepedia 插件访问。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ba7/10767981/45b6c7acb6da/gkad1007figgra1.jpg

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