Imrich Richard, Štofko Juraj, Boča Roman, Rajnák Cyril
Faculty of Health Sciences, University of Ss. Cyril and Methodius, 917 01, Trnava, Slovakia.
Faculty of Natural Sciences, University of Ss. Cyril and Methodius, 917 01, Trnava, Slovakia.
J Mol Model. 2023 Nov 13;29(12):370. doi: 10.1007/s00894-023-05780-5.
Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is investigated here. The solvent effect reduces the electron affinity to rather negative values and causes the negative electron affinity which manifests itself in a very high positive absolute reduction potential.
B3LYP method was utilized for a geometry optimization of nitisinone and mesotrione in their neural and ionized (L, L, L) forms of 6 structures. The calculations were conducted in water as a solvent using conductor-like polarizable continuum model (CPCM), nitisinone also in vacuo. The complete vibrational analysis at the true energy minimum allows evaluating the thermodynamic functions with focus to the zero-point energy and overall entropic term. The change of the Gibbs energy on reductions and/or oxidation facilitates evaluating the absolute reduction and absolute oxidation potentials. Also, DLPNO-CCSD(T) method that involves the major part of the correlation energy has been applied to nitisinone and mesotrione and their molecular ions.
尼替西农是一种中等大小的有机分子,用于治疗1型遗传性酪氨酸血症(HT - 1)。然而,结构类似的甲基磺草酮用作杀虫剂/除草剂。本文研究了这些分子的哪些分子性质导致了它们的相似性/差异。溶剂效应将电子亲和能降低到相当负的值,并导致负电子亲和能,这表现为非常高的正绝对还原电位。
采用B3LYP方法对尼替西农和甲基磺草酮的6种结构的中性和离子化(L,L,L)形式进行几何优化。计算在水作为溶剂的情况下使用类导体极化连续介质模型(CPCM)进行,尼替西农也在真空中进行计算。在真正的能量最小值处进行完整的振动分析,以便评估热力学函数,重点是零点能量和总熵项。还原和/或氧化时吉布斯自由能的变化有助于评估绝对还原电位和绝对氧化电位。此外,涉及大部分相关能的DLPNO - CCSD(T)方法已应用于尼替西农和甲基磺草酮及其分子离子。