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基因组范围内 基因家族的鉴定与特征分析及其对非生物胁迫的响应 。 你提供的原文似乎不完整,后面应该还有具体物种等相关信息。

Genome-Wide Identification and Characterization of the Gene Family and Its Response to Abiotic Stresses in .

作者信息

Tan Zhengwei, Lu Dandan, Yu Yongliang, Li Lei, Dong Wei, Xu Lanjie, Yang Qing, Wan Xiufu, Liang Huizhen

机构信息

Institute of Chinese Herbel Medicines, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China.

Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou 450002, China.

出版信息

Plants (Basel). 2023 Nov 3;12(21):3764. doi: 10.3390/plants12213764.

Abstract

The basic helix-loop-helix (bHLH) transcription factors possess DNA-binding and dimerization domains and are involved in various biological and physiological processes, such as growth and development, the regulation of secondary metabolites, and stress response. However, the gene family in has not been investigated. In this study, we performed a genome-wide identification and analysis of bHLH transcription factors in A total of 120 genes were identified, distributed across all 12 chromosomes, and classified into 24 subfamilies based on their phylogenetic relationships. Moreover, the 120 genes were subjected to comprehensive analyses, including protein sequence alignment, evolutionary assessment, motif prediction, and the analysis of promoter cis-acting elements. The promoter region analysis revealed that genes encompass cis-acting elements and were associated with various aspects of plant growth and development, responses to phytohormones, as well as responses to both abiotic and biotic stresses. Expression profiles, sourced from transcriptome databases, indicated distinct expression patterns among these genes, which appeared to be either tissue-specific or specific to certain cultivars. To further explore their functionality, we determined the expression levels of fifteen genes known to harbor motifs related to abiotic and hormone responses. This investigation encompassed treatments with ABA, salt, drought, and MeJA. The results demonstrated substantial variations in the expression patterns of genes in response to these abiotic and hormonal treatments. In summary, our study establishes a solid foundation for future inquiries into the roles and regulatory mechanisms of the gene family.

摘要

基本螺旋-环-螺旋(bHLH)转录因子具有DNA结合和二聚化结构域,并参与各种生物和生理过程,如生长发育、次生代谢物调控和应激反应。然而,尚未对[物种名称未给出]中的该基因家族进行研究。在本研究中,我们对[物种名称未给出]中的bHLH转录因子进行了全基因组鉴定和分析。共鉴定出120个[物种名称未给出]基因,分布在所有12条染色体上,并根据它们的系统发育关系分为24个亚家族。此外,对这120个[物种名称未给出]基因进行了全面分析,包括蛋白质序列比对、进化评估、基序预测以及启动子顺式作用元件分析。启动子区域分析表明[物种名称未给出]基因包含顺式作用元件,并与植物生长发育的各个方面、对植物激素的反应以及对非生物和生物胁迫的反应相关。来自转录组数据库的表达谱表明这些[物种名称未给出]基因具有不同的表达模式,这些模式似乎是组织特异性的或特定于某些品种的。为了进一步探索它们的功能,我们测定了15个已知含有与非生物和激素反应相关基序的[物种名称未给出]基因的表达水平。这项研究包括用脱落酸(ABA)、盐、干旱和茉莉酸甲酯(MeJA)处理。结果表明,这些[物种名称未给出]基因在响应这些非生物和激素处理时的表达模式存在显著差异。总之,我们的研究为未来探究[物种名称未给出]基因家族的作用和调控机制奠定了坚实基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09a5/10648185/934ec57d0fc3/plants-12-03764-g001.jpg

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