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NF-YB 基因家族的综合分析及其在 胁迫和激素处理下的表达。

Comprehensive Analysis of the NF-YB Gene Family and Expression under Abiotic Stress and Hormone Treatment in .

机构信息

State Key Laboratory of Forest Genetics and Breeding, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China.

出版信息

Int J Mol Sci. 2023 May 17;24(10):8910. doi: 10.3390/ijms24108910.

Abstract

NF-YB, a subfamily of Nuclear Factor Y (NF-Y) transcription factor, play crucial role in many biological processes of plant growth and development and abiotic stress responses, and they can therefore be good candidate factors for breeding stress-resistant plants. However, the NF-YB proteins have not yet been explored in , a tree species with high economic and ecological values in northeast China and other regions, limiting the breeding of anti-stress In order to explore the roles of NF-YB transcription factors in , we identified 20 family genes from full-length transcriptome data and carried out preliminary characterization of them through series of analyses on their phylogenetic relationships, conserved motif structure, subcellular localization prediction, GO annotation, promoter -acting elements as well as expression profiles under treatment of phytohormones (ABA, SA, MeJA) and abiotic stresses (salt and drought). The genes were classified into three clades through phylogenetic analysis and belong to non-LEC1 type NF-YB transcription factors. They have 10 conserved motifs; all genes contain a common motif, and their promoters have various phytohormones and abiotic stress related -acting elements. Quantitative real time reverse transcription PCR (RT-qPCR) analysis showed that the sensitivity of the genes to drought and salt stresses was higher in leaves than roots. The sensitivity of genes to ABA, MeJA, SA stresses was much lower than that to abiotic stress. Among the , showed the strongest responses to drought and ABA treatments. Further protein interaction prediction analysis for revealed that interacts with various factors associated with stress responses and epigenetic regulation as well as NF-YA/NF-YC factors. Taken together, these results unveiled novel NF-YB family genes and their characteristics, providing the basic knowledge for further in-depth studies on their roles in abiotic stress responses of .

摘要

NF-YB 是核因子 Y (NF-Y) 转录因子的一个亚家族,在植物生长发育和非生物胁迫响应的许多生物学过程中发挥着关键作用,因此它们可以成为培育抗胁迫植物的良好候选因素。然而,在 中,NF-YB 蛋白尚未被探索, 是中国东北和其他地区具有高经济和生态价值的树种,限制了抗胁迫的培育。为了探索 NF-YB 转录因子在 中的作用,我们从全长转录组数据中鉴定了 20 个 家族基因,并通过对其系统发育关系、保守基序结构、亚细胞定位预测、GO 注释、启动子作用元件以及对植物激素(ABA、SA、MeJA)和非生物胁迫(盐和干旱)处理的表达谱进行了一系列分析,对它们进行了初步表征。通过系统发育分析, 基因分为三个分支,属于非 LEC1 型 NF-YB 转录因子。它们有 10 个保守基序;所有基因都包含一个共同的基序,它们的启动子具有各种植物激素和非生物胁迫相关的作用元件。定量实时 RT-PCR(RT-qPCR)分析表明, 基因对干旱和盐胁迫的敏感性在叶片中高于根部。 基因对 ABA、MeJA、SA 胁迫的敏感性远低于非生物胁迫。在 中, 对干旱和 ABA 处理的响应最强。进一步对 基因的蛋白相互作用预测分析表明, 与各种与胁迫响应和表观遗传调控以及 NF-YA/NF-YC 因子相关的因子相互作用。综上所述,这些结果揭示了 中 NF-YB 家族基因的新成员及其特征,为进一步深入研究它们在 非生物胁迫响应中的作用提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e29/10219387/80e3e197cd88/ijms-24-08910-g001.jpg

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