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利用宏基因组鸟枪法测序鉴定人工关节感染

Identification of prosthetic joint infection by using metagenomic shotgun sequencing.

作者信息

Lin Liqiong, Shen Kaiwei, Xiao Lili, Lin Yu, Feng Eryou, Zhang Yiyuan

机构信息

Department of Orthopedics, Fuzhou Second Hospital, Fuzhou, PR China.

Fujian Provincial Clinical Medical Research Center for First Aid and Rehabilitation in Orthopaedic Trauma, Fuzhou, PR China.

出版信息

Access Microbiol. 2023 Oct 26;5(10):000425. doi: 10.1099/acmi.0.000425. eCollection 2023.

DOI:10.1099/acmi.0.000425
PMID:37970089
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10634495/
Abstract

BACKGROUND

Periprosthetic joint infection (PJI) is a serious complication after total knee arthroplasty. Fungal infections are prone to biofilm formation, which makes it hard to diagnose and clarify the pathogenic species.

CASE PRESENTATION

This case study provides evidence of a novel PJI pathogen that is otherwise difficult to detect using conventional methods. A patient was reviewed with persistent postoperative pain, swelling and eventually drainage around the left knee after undergoing a bilateral total knee arthroplasty 2 years previously for progressive osteoarthritis. By using metagenomic shotgun sequencing to analyse both bacterial and fungal agent sequences, we were able to identify fungal strains of , a rarely reported and difficult-to-culture PJI pathogen.

CONCLUSION

Metagenomic shotgun sequencing enables the detection of difficult-to-detect pathogens and the formulation of treatment recommendations for fungal infections with low positive rates based on gene content analysis.

摘要

背景

人工关节周围感染(PJI)是全膝关节置换术后的一种严重并发症。真菌感染易于形成生物膜,这使得其难以诊断和明确致病菌种。

病例介绍

本病例研究提供了一种新型PJI病原体的证据,该病原体用传统方法难以检测。一名患者因进行性骨关节炎于2年前接受双侧全膝关节置换术,术后左膝持续疼痛、肿胀,最终出现渗液。通过使用宏基因组鸟枪法测序分析细菌和真菌病原体序列,我们能够鉴定出一种很少报道且难以培养的PJI病原体——[具体真菌菌株名称未给出]的真菌菌株。

结论

宏基因组鸟枪法测序能够检测难以检测的病原体,并基于基因含量分析为阳性率较低的真菌感染制定治疗建议。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df9/10634495/429b6858bb90/acmi-5-425-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df9/10634495/5137f84b3543/acmi-5-425-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df9/10634495/429b6858bb90/acmi-5-425-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df9/10634495/5137f84b3543/acmi-5-425-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df9/10634495/429b6858bb90/acmi-5-425-g002.jpg

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本文引用的文献

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Periprosthetic Fungal Infections in Severe Endoprosthetic Infections of the Hip and Knee Joint-A Retrospective Analysis of a Certified Arthroplasty Centre of Excellence.髋膝关节严重人工关节感染中的假体周围真菌感染——一家认证卓越关节置换中心的回顾性分析
J Fungi (Basel). 2021 May 21;7(6):404. doi: 10.3390/jof7060404.
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Recent Advances and Novel Approaches in Laboratory-Based Diagnostic Mycology.基于实验室的诊断真菌学的最新进展与新方法
J Fungi (Basel). 2021 Jan 11;7(1):41. doi: 10.3390/jof7010041.
3
Comparison of the next-generation sequencing (NGS) technology with culture methods in the diagnosis of bacterial and fungal infections.
下一代测序(NGS)技术与培养方法在细菌和真菌感染诊断中的比较。
J Thorac Dis. 2020 Sep;12(9):4924-4929. doi: 10.21037/jtd-20-930.
4
Prosthetic joint infection due to Candida species: Case series and review of literature.念珠菌属引起的人工关节感染:病例系列及文献综述
Medicine (Baltimore). 2020 Apr;99(15):e19735. doi: 10.1097/MD.0000000000019735.
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Second Periprosthetic Joint Infection Caused by : How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy.由……引起的二期人工关节感染:基因组测序如何有助于确定最佳治疗策略
Front Med (Lausanne). 2020 Feb 21;7:53. doi: 10.3389/fmed.2020.00053. eCollection 2020.
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Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis.用于诊断具有挑战性的血培养阴性心内膜炎的下一代测序技术
Front Med (Lausanne). 2019 Sep 20;6:203. doi: 10.3389/fmed.2019.00203. eCollection 2019.
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Burkholderia cepacia complex infections: More complex than the bacterium name suggest.伯克霍尔德菌复合体感染:比细菌名称所暗示的更为复杂。
J Infect. 2018 Sep;77(3):166-170. doi: 10.1016/j.jinf.2018.07.006. Epub 2018 Jul 24.
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Cutibacterium acnes prosthetic joint infection: Diagnosis and treatment.痤疮丙酸杆菌所致人工关节感染:诊断与治疗
Orthop Traumatol Surg Res. 2018 Feb;104(1S):S19-S24. doi: 10.1016/j.otsr.2017.05.030. Epub 2017 Dec 2.
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Arch Pathol Lab Med. 2017 Jun;141(6):776-786. doi: 10.5858/arpa.2016-0539-RA. Epub 2017 Feb 7.
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