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使用机器学习原子间势进行具有第一性原理精度的深共晶溶剂的高效分子动力学模拟。

Efficient Molecular Dynamics Simulations of Deep Eutectic Solvents with First-Principles Accuracy Using Machine Learning Interatomic Potentials.

作者信息

Shayestehpour Omid, Zahn Stefan

机构信息

Leibniz Institute of Surface Engineering, 04318 Leipzig, Germany.

出版信息

J Chem Theory Comput. 2023 Dec 12;19(23):8732-8742. doi: 10.1021/acs.jctc.3c00944. Epub 2023 Nov 16.

DOI:10.1021/acs.jctc.3c00944
PMID:37972596
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10720642/
Abstract

In recent years, deep eutectic solvents emerged as highly tunable and ecofriendly alternatives to common organic solvents and liquid electrolytes. In the present work, the ability of machine learning (ML) interatomic potentials for molecular dynamics (MD) simulations of these liquids is explored, showcasing a trained neural network potential for a 1:2 ratio mixture of choline chloride and urea (reline). Using the ML potentials trained on density functional theory data, MD simulations for large systems of thousands of atoms and nanosecond-long time scales are feasible at a fraction of the computational cost of the target first-principles simulations. The obtained structural and dynamical properties of reline from MD simulations using our machine learning models are in good agreement with the first-principles MD simulations and experimental results. Running a single MD simulation is highlighted as a general shortcoming of typical first-principles studies if the dynamic properties are investigated. Furthermore, velocity cross-correlation functions are employed to study the collective dynamics of the molecular components in reline.

摘要

近年来,深共熔溶剂作为常见有机溶剂和液体电解质的高度可调和环境友好型替代品而出现。在本工作中,探索了机器学习(ML)原子间势用于这些液体分子动力学(MD)模拟的能力,展示了一种针对氯化胆碱和尿素(低共熔混合物)1:2比例混合物训练的神经网络势。使用基于密度泛函理论数据训练的ML势,对于包含数千个原子的大系统和纳秒级时间尺度的MD模拟在目标第一性原理模拟计算成本的一小部分下是可行的。使用我们的机器学习模型从MD模拟中获得的低共熔混合物的结构和动力学性质与第一性原理MD模拟和实验结果高度一致。如果研究动态性质,运行单个MD模拟被强调为典型第一性原理研究的一个普遍缺点。此外,采用速度互相关函数来研究低共熔混合物中分子组分的集体动力学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/bd262bddc6ba/ct3c00944_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3104b6c514c2/ct3c00944_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/e7118a35214f/ct3c00944_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3097f66e1a09/ct3c00944_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/e7aecb77498e/ct3c00944_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/f36ef6b7b0c5/ct3c00944_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3a4a46119d9b/ct3c00944_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/bd262bddc6ba/ct3c00944_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3104b6c514c2/ct3c00944_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/e7118a35214f/ct3c00944_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3097f66e1a09/ct3c00944_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/e7aecb77498e/ct3c00944_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/f36ef6b7b0c5/ct3c00944_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/3a4a46119d9b/ct3c00944_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5145/10720642/bd262bddc6ba/ct3c00944_0007.jpg

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