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感音神经性听力损失的人工耳蜗植入患者的 和 非编码区缺乏甲基化变化。

Lack of Methylation Changes in and Non-coding Regions of Cochlear Implant Patients with Sensorineural Hearing Loss.

作者信息

Sumalde Angelo Augusto M, Yang Ivana V, Yarza Talitha Karisse L, Tobias-Grasso Celina Ann M, Tantoco Ma Leah C, Davidson Elizabeth, Chan Abner L, Azamian Mahshid S, Cruz Teresa Luisa G, Lalani Seema R, Reyes-Quintos Maria Rina T, Cutiongco-de la Paz Eva Maria, Santos-Cortez Regie Lyn P, Chiong Charlotte M

机构信息

College of Medicine, University of the Philippines Manila, Manila, Philippines.

Department of Otolaryngology - Head and Neck Surgery, School of Medicine, University of Colorado Anschutz Medical Campus (CU-AMC), Aurora, Colorado, USA.

出版信息

Acta Med Philipp. 2023 Sep 28;57(9):116-120. doi: 10.47895/amp.v57i9.5200.

DOI:10.47895/amp.v57i9.5200
PMID:37990697
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10662870/
Abstract

OBJECTIVE

Recent advances in epigenetic studies continue to reveal novel mechanisms of gene regulation and control, however little is known on the role of epigenetics in sensorineural hearing loss (SNHL) in humans. We aimed to investigate the methylation patterns of two regions, one in and another in in Filipino patients with SNHL compared to hearing control individuals.

METHODS

We investigated an promoter region that was previously identified as differentially methylated in children with SNHL and lead exposure. Additionally, we investigated a sequence in an enhancer-like region within that contains four CpGs in close proximity. Bisulfite conversion was performed on salivary DNA samples from 15 children with SNHL and 45 unrelated ethnically-matched individuals. We then performed methylation-specific real-time PCR analysis (qMSP) using TaqMan probes to determine percentage methylation of the two regions.

RESULTS

Using qMSP, both our cases and controls had zero methylation at the targeted and regions.

CONCLUSION

Our study showed no changes in methylation at the selected CpG regions in and in the two comparison groups with or without SNHL. This may be due to a lack of environmental exposures to these target regions. Other epigenetic marks may be present around these regions as well as those of other HL-associated genes.

摘要

目的

表观遗传学研究的最新进展不断揭示基因调控的新机制,但关于表观遗传学在人类感音神经性听力损失(SNHL)中的作用知之甚少。我们旨在研究菲律宾SNHL患者与听力正常对照个体相比,两个区域的甲基化模式,一个区域在[具体位置1],另一个区域在[具体位置2]。

方法

我们研究了一个[基因名称]启动子区域,该区域先前被确定在SNHL儿童和铅暴露儿童中存在差异甲基化。此外,我们还研究了[具体基因]内一个类似增强子区域的一段序列,该序列包含四个紧密相邻的CpG。对15名SNHL儿童和45名种族匹配的无关个体的唾液DNA样本进行亚硫酸氢盐转化。然后使用TaqMan探针进行甲基化特异性实时PCR分析(qMSP),以确定这两个区域的甲基化百分比。

结果

使用qMSP,我们的病例组和对照组在目标[区域1名称]和[区域2名称]区域的甲基化均为零。

结论

我们的研究表明,在有或无SNHL的两个比较组中,[区域1名称]和[区域2名称]中选定的CpG区域的甲基化没有变化。这可能是由于缺乏对这些目标区域的环境暴露。在这些区域周围以及其他与听力损失相关基因的区域可能还存在其他表观遗传标记。

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本文引用的文献

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Identification of Novel Candidate Genes and Variants for Hearing Loss and Temporal Bone Anomalies.鉴定新型候选基因和听力损失及颞骨畸形相关变异。
Genes (Basel). 2021 Apr 13;12(4):566. doi: 10.3390/genes12040566.
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Recent advancements in understanding the role of epigenetics in the auditory system.近年来,人们对表观遗传学在听觉系统中的作用有了更深入的了解。
Gene. 2020 Nov 30;761:144996. doi: 10.1016/j.gene.2020.144996. Epub 2020 Jul 29.
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Hearing loss risk and DNA methylation signatures in preschool children following lead and cadmium exposure from an electronic waste recycling area.电子废物回收区铅和镉暴露对学龄前儿童听力损失风险和 DNA 甲基化特征的影响
Chemosphere. 2020 May;246:125829. doi: 10.1016/j.chemosphere.2020.125829. Epub 2020 Jan 3.
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DNA Methylation Validation Methods: a Coherent Review with Practical Comparison.DNA甲基化验证方法:一项具有实际比较的连贯综述
Biol Proced Online. 2019 Oct 1;21:19. doi: 10.1186/s12575-019-0107-z. eCollection 2019.
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A2ML1 and otitis media: novel variants, differential expression, and relevant pathways.A2ML1 与中耳炎:新型变异体、差异表达及相关通路。
Hum Mutat. 2019 Aug;40(8):1156-1171. doi: 10.1002/humu.23769. Epub 2019 May 21.
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Exome sequencing reveals novel variants and unique allelic spectrum for hearing impairment in Filipino cochlear implantees.外显子组测序揭示了菲律宾人工耳蜗植入者听力障碍的新变异和独特等位基因谱。
Clin Genet. 2019 May;95(5):634-636. doi: 10.1111/cge.13515. Epub 2019 Mar 4.
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Genome-wide DNA methylation comparison between live human brain and peripheral tissues within individuals.个体活人脑与外周组织的全基因组 DNA 甲基化比较。
Transl Psychiatry. 2019 Jan 31;9(1):47. doi: 10.1038/s41398-019-0376-y.
8
Genomic Landscape and Mutational Signatures of Deafness-Associated Genes.耳聋相关基因的基因组景观和突变特征。
Am J Hum Genet. 2018 Oct 4;103(4):484-497. doi: 10.1016/j.ajhg.2018.08.006. Epub 2018 Sep 20.
9
The SLC26A4 c.706C>G (p.Leu236Val) Variant is a Frequent Cause of Hearing Impairment in Filipino Cochlear Implantees.SLC26A4 c.706C>G (p.Leu236Val) 变异是菲律宾人工耳蜗植入者听力障碍的一个常见原因。
Otol Neurotol. 2018 Sep;39(8):e726-e730. doi: 10.1097/MAO.0000000000001893.
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iMETHYL: an integrative database of human DNA methylation, gene expression, and genomic variation.iMETHYL:一个整合了人类DNA甲基化、基因表达和基因组变异的数据库。
Hum Genome Var. 2018 Mar 29;5:18008. doi: 10.1038/hgv.2018.8. eCollection 2018.