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噬菌体感染的α变形菌的基因组结构的多样性和保护。

Diversity and conservation of the genome architecture of phages infecting the Alphaproteobacteria.

机构信息

Department of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.

出版信息

Microbiol Spectr. 2024 Jan 11;12(1):e0282723. doi: 10.1128/spectrum.02827-23. Epub 2023 Nov 22.

DOI:10.1128/spectrum.02827-23
PMID:37991376
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10783043/
Abstract

This study reports the results of the largest analysis of genome sequences from phages that infect the Alphaproteobacteria class of bacterial hosts. We analyzed over 100 whole genome sequences of phages to construct dotplots, categorize them into genetically distinct clusters, generate a bootstrapped phylogenetic tree, compute protein orthologs, and predict packaging strategies. We determined that the phage sequences primarily cluster by the bacterial host family, phage morphotype, and genome size. We expect that the findings reported in this seminal study will facilitate future analyses that will improve our knowledge of the phages that infect these hosts.

摘要

本研究报告了对感染α变形菌宿主的噬菌体进行的最大基因组序列分析结果。我们分析了超过 100 个噬菌体的全基因组序列,构建了点图,将它们分类为遗传上不同的聚类,生成了一个自举系统发育树,计算了蛋白质直系同源物,并预测了包装策略。我们确定噬菌体序列主要按细菌宿主科、噬菌体形态和基因组大小聚类。我们预计,本研究报告中的发现将促进未来的分析,从而提高我们对感染这些宿主的噬菌体的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/2c2cbf8c1075/spectrum.02827-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/dfb2d9933a97/spectrum.02827-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/2a4be2762e73/spectrum.02827-23.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/ef2440f07a5c/spectrum.02827-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/19c280c9e1e7/spectrum.02827-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/2c2cbf8c1075/spectrum.02827-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/dfb2d9933a97/spectrum.02827-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/2a4be2762e73/spectrum.02827-23.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/ef2440f07a5c/spectrum.02827-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/19c280c9e1e7/spectrum.02827-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d5e/10783043/2c2cbf8c1075/spectrum.02827-23.f005.jpg

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