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一种基于深度学习的植物寄生线虫管理决策支持工具。

A Deep Learning-Based Decision Support Tool for Plant-Parasitic Nematode Management.

作者信息

Pun Top Bahadur, Neupane Arjun, Koech Richard

机构信息

School of Engineering and Technology, Central Queensland University, Rockhampton, QLD 4701, Australia.

School of Health, Medical and Applied Sciences, Central Queensland University, Bundaberg, QLD 4760, Australia.

出版信息

J Imaging. 2023 Nov 6;9(11):240. doi: 10.3390/jimaging9110240.

Abstract

Plant-parasitic nematodes (PPN), especially sedentary endoparasitic nematodes like root-knot nematodes (RKN), pose a significant threat to major crops and vegetables. They are responsible for causing substantial yield losses, leading to economic consequences, and impacting the global food supply. The identification of PPNs and the assessment of their population is a tedious and time-consuming task. This study developed a state-of-the-art deep learning model-based decision support tool to detect and estimate the nematode population. The decision support tool is integrated with the fast inferencing YOLOv5 model and used pretrained nematode weight to detect plant-parasitic nematodes (juveniles) and eggs. The performance of the YOLOv5-640 model at detecting RKN eggs was as follows: precision = 0.992; recall = 0.959; F1-score = 0.975; and mAP = 0.979. YOLOv5-640 was able to detect RKN eggs with an inference time of 3.9 milliseconds, which is faster compared to other detection methods. The deep learning framework was integrated into a user-friendly web application system to build a fast and reliable prototype nematode decision support tool (NemDST). The NemDST facilitates farmers/growers to input image data, assess the nematode population, track the population growths, and recommend immediate actions necessary to control nematode infestation. This tool has the potential for rapid assessment of the nematode population to minimise crop yield losses and enhance financial outcomes.

摘要

植物寄生线虫(PPN),尤其是像根结线虫(RKN)这样的定居内寄生线虫,对主要农作物和蔬菜构成了重大威胁。它们导致了大量的产量损失,造成了经济后果,并影响了全球粮食供应。识别PPN并评估其数量是一项繁琐且耗时的任务。本研究开发了一种基于深度学习模型的先进决策支持工具,用于检测和估计线虫数量。该决策支持工具与快速推理的YOLOv5模型集成,并使用预训练的线虫权重来检测植物寄生线虫(幼虫)和卵。YOLOv5-640模型在检测RKN卵方面的性能如下:精确率 = 0.992;召回率 = 0.959;F1分数 = 0.975;平均精度均值(mAP) = 0.979。YOLOv5-640能够以3.9毫秒的推理时间检测RKN卵,这比其他检测方法更快。深度学习框架被集成到一个用户友好的网络应用系统中,以构建一个快速可靠的线虫决策支持工具原型(NemDST)。NemDST便于农民/种植者输入图像数据、评估线虫数量、跟踪数量增长,并推荐控制线虫侵染所需的立即行动。该工具具有快速评估线虫数量的潜力,以尽量减少作物产量损失并提高经济收益。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a59/10671933/5d5bc4e37d96/jimaging-09-00240-g001.jpg

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