College of Life Science, Shanxi University, Taiyuan 030006, China.
Institute of Applied Biology, Shanxi University, Taiyuan 030006, China.
Genes (Basel). 2023 Nov 19;14(11):2103. doi: 10.3390/genes14112103.
Plant-specific YABBY transcription factors play an important role in lateral organ development and abiotic stress responses. However, the functions of the genes in quinoa remain elusive. In this study, twelve () genes were identified in the quinoa genome, and they were distributed on nine chromosomes. They were classified into FIL/YAB3, YAB2, YAB5, INO, and CRC clades. All genes consist of six or seven exons, and their proteins contain both N-terminal C2C2 zinc finger motifs and C-terminal YABBY domains. Ninety-three -regulatory elements were revealed in gene promoters, and they were divided into six groups, such as -elements involved in light response, hormone response, development, and stress response. Six genes were significantly upregulated by salt stress, while one was downregulated. Nine genes were upregulated under drought stress, whereas six genes were downregulated under cadmium treatment. Tissue expression profiles showed that nine genes were expressed in seedlings, leaves, and flowers, seven in seeds, and two specifically in flowers, but no expression was detected in roots. Furthermore, could rescue the mutant phenotype in but not , a paralog of , indicative of functional conservation and divergence among these genes. Taken together, these results lay a foundation for further functional analysis of genes in quinoa growth, development, and abiotic stress responses.
植物特异性 YABBY 转录因子在侧生器官发育和非生物胁迫响应中发挥重要作用。然而,藜麦中这些基因的功能仍不清楚。本研究在藜麦基因组中鉴定出 12 个 () 基因,它们分布在 9 条染色体上。它们被分为 FIL/YAB3、YAB2、YAB5、INO 和 CRC 分支。所有 基因都包含六个或七个外显子,其蛋白含有 N 端 C2C2 锌指结构域和 C 端 YABBY 结构域。在 基因启动子中揭示了 93 个调控元件,它们分为六个组,如涉及光反应、激素反应、发育和应激反应的 -元件。盐胁迫显著上调了 6 个 基因,而下调了 1 个。干旱胁迫上调了 9 个 基因,而镉处理下调了 6 个 基因。组织表达谱显示,9 个 基因在幼苗、叶片和花中表达,7 个在种子中表达,2 个在花中特异性表达,但在根中未检测到 表达。此外,在 中可以挽救 突变体表型,但在 中不能,而 是 的一个旁系同源物,表明这些 基因在功能上既有保守性又有分化。总之,这些结果为进一步研究藜麦生长、发育和非生物胁迫响应中 基因的功能奠定了基础。