Departamento de Farmacia, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad de México 04510, Mexico.
Instituto de Química, Unidad Mérida, Universidad Nacional Autónoma de México, Carretera Mérida-Tetiz, Km. 4.5, Ucú 97357, Mexico.
Int J Mol Sci. 2023 Nov 7;24(22):16046. doi: 10.3390/ijms242216046.
Human leishmaniasis is a neglected tropical disease which affects nearly 1.5 million people every year, with Mexico being an important endemic region. One of the major defense mechanisms of these parasites is based in the polyamine metabolic pathway, as it provides the necessary compounds for its survival. Among the enzymes in this route, trypanothione reductase (TryR), an oxidoreductase enzyme, is crucial for the genus' survival against oxidative stress. Thus, it poses as an attractive drug target, yet due to the size and features of its catalytic pocket, modeling techniques such as molecular docking focusing on that region is not convenient. Herein, we present a computational study using several structure-based approaches to assess the druggability of TryR from , the predominant species in Mexico, beyond its catalytic site. Using this consensus methodology, three relevant pockets were found, of which the one we call σ-site promises to be the most favorable one. These findings may help the design of new drugs of trypanothione-related diseases.
人类利什曼病是一种被忽视的热带病,每年影响近 150 万人,墨西哥是一个重要的地方性流行区域。这些寄生虫的主要防御机制之一基于多胺代谢途径,因为它为其生存提供了必要的化合物。在该途径中的酶中, 还原型谷胱甘肽(TryR)是一种氧化还原酶,对属的生存至关重要,以抵御氧化应激。因此,它是一个有吸引力的药物靶点,但由于其催化口袋的大小和特征,针对该区域的分子对接等建模技术并不方便。在此,我们使用几种基于结构的方法进行了一项计算研究,以评估来自墨西哥主要 物种 的 TryR 的可药性,超越其催化部位。使用这种共识方法,发现了三个相关的口袋,其中我们称之为 σ-口袋的那个最有希望。这些发现可能有助于设计与 trypanothione 相关疾病的新药。