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Characterization of phage vB_EcoS-EE09 infecting DSM613 Isolated from Wastewater Treatment Plant Effluent and Comparative Proteomics of the Infected and Non-Infected Host.

作者信息

Barrero-Canosa Jimena, Wang Luyao, Oyugi Angelah, Klaes Simon, Fischer Pascal, Adrian Lorenz, Szewzyk Ulrich, Cooper Myriel

机构信息

Institute of Environmental Technology, Chair of Environmental Microbiology, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany.

Institute of Biotechnology, Chair of Geobiotechnology, Technische Universität Berlin, Ackerstraße 76, 13355 Berlin, Germany.

出版信息

Microorganisms. 2023 Nov 2;11(11):2688. doi: 10.3390/microorganisms11112688.


DOI:10.3390/microorganisms11112688
PMID:38004701
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10673088/
Abstract

Phages influence microbial communities, can be applied in phage therapy, or may serve as bioindicators, e.g., in (waste)water management. We here characterized the Escherichia phage vB_EcoS-EE09 isolated from an urban wastewater treatment plant effluent. Phage vB_EcoS-EE09 belongs to the genus , class . It has an icosahedral capsid with a long non-contractile tail and a dsDNA genome with an approximate size of 44 kb and a 54.6% GC content. Phage vB_EcoS-EE09 infected 12 out of the 17 strains tested. We identified 16 structural phage proteins, including the major capsid protein, in cell-free lysates by protein mass spectrometry. Comparative proteomics of protein extracts of infected cells revealed that proteins involved in amino acid and protein metabolism were more abundant in infected compared to non-infected cells. Among the proteins involved in the stress response, 74% were less abundant in the infected cultures compared to the non-infected controls, with six proteins showing significant less abundance. Repressing the expression of these proteins may be a phage strategy to evade host defense mechanisms. Our results contribute to diversifying phage collections, identifying structural proteins to enable better reliability in annotating taxonomically related phage genomes, and understanding phage-host interactions at the protein level.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/617477f708c0/microorganisms-11-02688-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/3558a6e7e153/microorganisms-11-02688-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/bc5c2c3fc798/microorganisms-11-02688-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/bbad0282fd28/microorganisms-11-02688-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/7bb9bee21068/microorganisms-11-02688-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/617477f708c0/microorganisms-11-02688-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/3558a6e7e153/microorganisms-11-02688-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/bc5c2c3fc798/microorganisms-11-02688-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/bbad0282fd28/microorganisms-11-02688-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/7bb9bee21068/microorganisms-11-02688-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8be/10673088/617477f708c0/microorganisms-11-02688-g005.jpg

相似文献

[1]
Characterization of phage vB_EcoS-EE09 infecting DSM613 Isolated from Wastewater Treatment Plant Effluent and Comparative Proteomics of the Infected and Non-Infected Host.

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引用本文的文献

[1]
Revealing taxonomy, activity, and substrate assimilation in mixed bacterial communities by GroEL-proteotyping-based stable isotope probing.

iScience. 2024-10-28

[2]
Identification of amino acid residue in the LamB responsible for the receptor compatibility of polyvalent coliphage CSP1.

J Virol. 2024-10-22

本文引用的文献

[1]
GroEL-Proteotyping of Bacterial Communities Using Tandem Mass Spectrometry.

Int J Mol Sci. 2023-10-28

[2]
VirClust-A Tool for Hierarchical Clustering, Core Protein Detection and Annotation of () Viruses.

Viruses. 2023-4-19

[3]
Proteomic Study of the Interactions between Phages and the Bacterial Host .

Microbiol Spectr. 2023-3-6

[4]
Global trends and hotspots of phage therapy for bacterial infection: A bibliometric visualized analysis from 2001 to 2021.

Front Microbiol. 2023-1-9

[5]
PhaTYP: predicting the lifestyle for bacteriophages using BERT.

Brief Bioinform. 2023-1-19

[6]
The Life Cycle Transitions of Temperate Phages: Regulating Factors and Potential Ecological Implications.

Viruses. 2022-8-28

[7]
Gene Networks and Pathways Involved in Response to Multiple Stressors.

Microorganisms. 2022-9-6

[8]
Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing.

Microorganisms. 2022-2-4

[9]
Structure and functional capacity of a benzene-mineralizing, nitrate-reducing microbial community.

J Appl Microbiol. 2022-4

[10]
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.

Nucleic Acids Res. 2022-1-7

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