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响应对羟基苯甲酸诱导的连作障碍的凯氏带膜结构域蛋白样基因家族的全基因组鉴定与表达分析

A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in in Response to p-HBA-Induced Continuous Cropping Obstacles.

作者信息

Su Yating, Zeeshan Ul Haq Muhammad, Liu Xiaofeng, Li Yang, Yu Jing, Yang Dongmei, Wu Yougen, Liu Ya

机构信息

School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya 572025, China.

School of Tropical Agriculture and Forestry, Hainan University, Danzhou 571737, China.

出版信息

Plants (Basel). 2023 Nov 19;12(22):3901. doi: 10.3390/plants12223901.

Abstract

Casparian strip membrane domain protein-like () genes are key genes for the formation and regulation of the Casparian strip and play an important role in plant abiotic stress. However, little research has focused on the members, characteristics, and biological functions of the patchouli gene family. In this study, 156 genes were identified at the whole-genome level. Subcellular localization predicted that 75.6% of proteins reside on the cell membrane. A phylogenetic analysis categorized genes into five subclusters alongside genes. In a cis-acting element analysis, a total of 16 different cis-elements were identified, among which the photo-responsive element was the most common in the gene family. A transcriptome analysis showed that p-hydroxybenzoic acid, an allelopathic autotoxic substance, affected the expression pattern of , including a total of 27 upregulated genes and 30 down-regulated genes, suggesting that these may play an important role in the regulation of patchouli continuous cropping obstacles by affecting the formation and integrity of Casparian strip bands. These results provided a theoretical basis for exploring and verifying the function of the patchouli gene family and its role in continuous cropping obstacles.

摘要

凯氏带膜结构域蛋白样()基因是凯氏带形成和调控的关键基因,在植物非生物胁迫中发挥重要作用。然而,关于广藿香基因家族的成员、特征和生物学功能的研究较少。本研究在全基因组水平上鉴定出156个基因。亚细胞定位预测75.6%的蛋白位于细胞膜上。系统发育分析将基因与基因一起分为五个亚簇。在顺式作用元件分析中,共鉴定出16种不同的顺式元件,其中光响应元件在基因家族中最为常见。转录组分析表明,化感自毒物质对羟基苯甲酸影响的表达模式,包括27个上调基因和30个下调基因,表明这些基因可能通过影响凯氏带的形成和完整性在广藿香连作障碍调控中发挥重要作用。这些结果为探索和验证广藿香基因家族的功能及其在连作障碍中的作用提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c0a3/10675793/ec1a8806859b/plants-12-03901-g001.jpg

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