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超越单细胞:微流控技术赋能多组学分析。

Beyond single cells: microfluidics empowering multiomics analysis.

机构信息

Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, China.

Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province, Xiamen, 361005, China.

出版信息

Anal Bioanal Chem. 2024 Apr;416(9):2203-2220. doi: 10.1007/s00216-023-05028-4. Epub 2023 Nov 26.

DOI:10.1007/s00216-023-05028-4
PMID:38008783
Abstract

Single-cell multiomics technologies empower simultaneous measurement of multiple types of molecules within individual cells, providing a more profound comprehension compared with the analysis of discrete molecular layers from different cells. Microfluidic technology, on the other hand, has emerged as a pivotal facilitator for high-throughput single-cell analysis, offering precise control and manipulation of individual cells. The primary focus of this review encompasses an appraisal of cutting-edge microfluidic platforms employed in the realm of single-cell multiomics analysis. Furthermore, it discusses technological advancements in various single-cell omics such as genomics, transcriptomics, epigenomics, and proteomics, with their perspective applications. Finally, it provides future prospects of these integrated single-cell multiomics methodologies, shedding light on the possibilities for future biological research.

摘要

单细胞多组学技术能够在单个细胞内同时测量多种类型的分子,与分析来自不同细胞的离散分子层相比,能够提供更深入的理解。另一方面,微流控技术已成为高通量单细胞分析的关键促进因素,能够精确控制和操作单个细胞。本综述的主要重点是评估单细胞多组学分析领域中使用的最新微流控平台。此外,它还讨论了各种单细胞组学(如基因组学、转录组学、表观基因组学和蛋白质组学)的技术进展,及其潜在的应用。最后,它提供了这些集成的单细胞多组学方法的未来前景,揭示了未来生物研究的可能性。

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Beyond single cells: microfluidics empowering multiomics analysis.超越单细胞:微流控技术赋能多组学分析。
Anal Bioanal Chem. 2024 Apr;416(9):2203-2220. doi: 10.1007/s00216-023-05028-4. Epub 2023 Nov 26.
2
Single-cell multi-omics sequencing and its application in tumor heterogeneity.单细胞多组学测序及其在肿瘤异质性中的应用。
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Microfluidics Coupled Mass Spectrometry for Single Cell Multi-Omics.微流控与质谱联用技术在单细胞多组学中的应用
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Single-cell multiomics: technologies and data analysis methods.单细胞多组学:技术与数据分析方法。
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引用本文的文献

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Application of Spatial Omics in the Cardiovascular System.空间组学在心血管系统中的应用。
Research (Wash D C). 2025 Mar 8;8:0628. doi: 10.34133/research.0628. eCollection 2025.
2
The axis of tumor-associated macrophages, extracellular matrix proteins, and cancer-associated fibroblasts in oncogenesis.肿瘤相关巨噬细胞、细胞外基质蛋白和癌症相关成纤维细胞在肿瘤发生中的作用轴。
Cancer Cell Int. 2024 Oct 7;24(1):335. doi: 10.1186/s12935-024-03518-8.
3
All the single cells: if you like it then you should put some virus on it.所有单细胞:如果你喜欢它,那么你应该放一些病毒在它上面。

本文引用的文献

1
The tumor microenvironment shows a hierarchy of cell-cell interactions dominated by fibroblasts.肿瘤微环境呈现出以成纤维细胞为主导的细胞间相互作用的层次结构。
Nat Commun. 2023 Sep 19;14(1):5810. doi: 10.1038/s41467-023-41518-w.
2
Digital-scRRBS: A Cost-Effective, Highly Sensitive, and Automated Single-Cell Methylome Analysis Platform via Digital Microfluidics.数字 scRRBS:一种基于数字微流控的经济高效、高灵敏度和自动化单细胞甲基化组分析平台。
Anal Chem. 2023 Sep 5;95(35):13313-13321. doi: 10.1021/acs.analchem.3c02484. Epub 2023 Aug 24.
3
Chemoenzymatic Measurement of LacNAc in Single-Cell Multiomics Reveals It as a Cell-Surface Indicator of Glycolytic Activity of CD8 T Cells.
J Virol. 2024 Jul 23;98(7):e0127323. doi: 10.1128/jvi.01273-23. Epub 2024 Jun 21.
基于酶化学测定的单细胞多组学检测 LacNAc,揭示其可作为 CD8 T 细胞糖酵解活性的细胞表面标志物。
J Am Chem Soc. 2023 Jun 14;145(23):12701-12716. doi: 10.1021/jacs.3c02602. Epub 2023 Jun 5.
4
Single-cell analysis targeting the proteome.针对蛋白质组的单细胞分析。
Nat Rev Chem. 2020 Mar;4(3):143-158. doi: 10.1038/s41570-020-0162-7. Epub 2020 Feb 17.
5
Time-resolved assessment of single-cell protein secretion by sequencing.通过测序对单细胞蛋白质分泌进行时间分辨评估。
Nat Methods. 2023 May;20(5):723-734. doi: 10.1038/s41592-023-01841-y. Epub 2023 Apr 10.
6
Best practices for single-cell analysis across modalities.多模态单细胞分析的最佳实践。
Nat Rev Genet. 2023 Aug;24(8):550-572. doi: 10.1038/s41576-023-00586-w. Epub 2023 Mar 31.
7
Well-TEMP-seq as a microwell-based strategy for massively parallel profiling of single-cell temporal RNA dynamics.基于微室的大规模平行分析单细胞时间 RNA 动态的 Well-TEMP-seq 方法。
Nat Commun. 2023 Mar 7;14(1):1272. doi: 10.1038/s41467-023-36902-5.
8
Single-cell proteomics enabled by next-generation sequencing or mass spectrometry.基于下一代测序或质谱的单细胞蛋白质组学。
Nat Methods. 2023 Mar;20(3):363-374. doi: 10.1038/s41592-023-01791-5. Epub 2023 Mar 2.
9
Methods and applications for single-cell and spatial multi-omics.单细胞和空间多组学的方法和应用。
Nat Rev Genet. 2023 Aug;24(8):494-515. doi: 10.1038/s41576-023-00580-2. Epub 2023 Mar 2.
10
Correlated gene modules uncovered by high-precision single-cell transcriptomics.高精度单细胞转录组学揭示的相关基因模块。
Proc Natl Acad Sci U S A. 2022 Dec 20;119(51):e2206938119. doi: 10.1073/pnas.2206938119. Epub 2022 Dec 12.