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深度学习中的小波散射网络在发现瑞典直肠癌患者队列中的蛋白质标记物中的应用。

Wavelet scattering networks in deep learning for discovering protein markers in a cohort of Swedish rectal cancer patients.

机构信息

Barts and The London School of Medicine and Dentistry Queen Mary, University of London Turner Street, London, UK.

Division of Oncology Department of Biomedical and Clinical Sciences, Linkoping University, Linkoping, Sweden.

出版信息

Cancer Med. 2023 Dec;12(23):21502-21518. doi: 10.1002/cam4.6672. Epub 2023 Nov 28.

Abstract

BACKGROUND

Cancer biomarkers play a pivotal role in the diagnosis, prognosis, and treatment response prediction of the disease. In this study, we analyzed the expression levels of RhoB and DNp73 proteins in rectal cancer, as captured in immunohistochemical images, to predict the 5-year survival time of two patient groups: one with preoperative radiotherapy and one without.

METHODS

The utilization of deep convolutional neural networks in medical research, particularly in clinical cancer studies, has been gaining substantial attention. This success primarily stems from their ability to extract intricate image features that prove invaluable in machine learning. Another innovative method for extracting features at multiple levels is the wavelet-scattering network. Our study combines the strengths of these two convolution-based approaches to robustly extract image features related to protein expression.

RESULTS

The efficacy of our approach was evaluated across various tissue types, including tumor, biopsy, metastasis, and adjacent normal tissue. Statistical assessments demonstrated exceptional performance across a range of metrics, including prediction accuracy, classification accuracy, precision, and the area under the receiver operating characteristic curve.

CONCLUSION

These results underscore the potential of dual convolutional learning to assist clinical researchers in the timely validation and discovery of cancer biomarkers.

摘要

背景

癌症生物标志物在疾病的诊断、预后和治疗反应预测中起着关键作用。在这项研究中,我们分析了直肠癌细胞中 RhoB 和 DNp73 蛋白的表达水平,这些蛋白通过免疫组织化学图像捕获,以预测两组患者的 5 年生存时间:一组接受术前放疗,另一组未接受。

方法

深度卷积神经网络在医学研究中的应用,特别是在临床癌症研究中,已经引起了广泛关注。这种成功主要源于它们提取复杂图像特征的能力,这些特征在机器学习中非常有价值。另一种用于在多个层次上提取特征的创新方法是小波散射网络。我们的研究结合了这两种基于卷积的方法的优势,以稳健地提取与蛋白表达相关的图像特征。

结果

我们的方法在各种组织类型中都进行了评估,包括肿瘤、活检、转移和相邻正常组织。统计评估表明,在一系列指标上都表现出了卓越的性能,包括预测准确性、分类准确性、精度和接收者操作特征曲线下的面积。

结论

这些结果强调了双卷积学习在协助临床研究人员及时验证和发现癌症生物标志物方面的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b97/10726782/c8f4ec45b373/CAM4-12-21502-g003.jpg

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