Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; Department of Biology, University of Oxford, Oxford OX1 3SZ, UK.
Curr Biol. 2023 Dec 18;33(24):5404-5414.e9. doi: 10.1016/j.cub.2023.11.002. Epub 2023 Nov 28.
Cellular responses to environmental changes are often highly heterogeneous and exhibit seemingly random dynamics. The astonishing insight of chaos theory is that such unpredictable patterns can, in principle, arise without the need for any random processes, i.e., purely deterministically without noise. However, while chaos is well understood in mathematics and physics, its role in cell biology remains unclear because the complexity and noisiness of biological systems make testing difficult. Here, we show that chaos explains the heterogeneous response of Escherichia coli cells to oxidative stress. We developed a theoretical model of the gene expression dynamics and demonstrate that chaotic behavior arises from rapid molecular feedbacks that are coupled with cell growth dynamics and cell-cell interactions. Based on theoretical predictions, we then designed single-cell experiments to show we can shift gene expression from periodic oscillations to chaos on demand. Our work suggests that chaotic gene regulation can be employed by cell populations to generate strong and variable responses to changing environments.
细胞对环境变化的反应通常具有高度的异质性,并表现出看似随机的动力学。混沌理论令人惊讶的见解是,这种不可预测的模式原则上可以在不需要任何随机过程的情况下出现,即纯粹确定性而没有噪声。然而,尽管混沌在数学和物理学中得到了很好的理解,但它在细胞生物学中的作用尚不清楚,因为生物系统的复杂性和嘈杂性使得测试变得困难。在这里,我们表明混沌解释了大肠杆菌细胞对氧化应激的异质反应。我们开发了一个基因表达动力学的理论模型,并证明混沌行为源于与细胞生长动力学和细胞-细胞相互作用相耦合的快速分子反馈。基于理论预测,我们随后设计了单细胞实验,表明我们可以按需将基因表达从周期性振荡转变为混沌。我们的工作表明,混沌基因调控可以被细胞群体用来对不断变化的环境产生强烈和多变的反应。