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基于全切片水平分割的结直肠癌错配修复缺陷/错配修复正常深度学习检测器的开发。

Development of a whole-slide-level segmentation-based dMMR/pMMR deep learning detector for colorectal cancer.

作者信息

Tong Zhou, Wang Yin, Bao Xuanwen, Deng Yu, Lin Bo, Su Ge, Ye Kejun, Dai Xiaomeng, Zhang Hangyu, Liu Lulu, Wang Wenyu, Zheng Yi, Fang Weijia, Zhao Peng, Ding Peirong, Deng Shuiguang, Xu Xiangming

机构信息

Department of Medical Oncology, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China.

College of Computer Science and Technology, Zhejiang University, Hangzhou 310027, China.

出版信息

iScience. 2023 Nov 15;26(12):108468. doi: 10.1016/j.isci.2023.108468. eCollection 2023 Dec 15.

DOI:10.1016/j.isci.2023.108468
PMID:38077136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10709130/
Abstract

To investigate whole-slide-level prediction in the field of artificial intelligence identification of dMMR/pMMR from hematoxylin and eosin (H&E) in colorectal cancer (CRC), we established a segmentation-based dMMR/pMMR deep learning detector (SPEED). Our model was approximately 1,700 times faster than that of the classification-based model. For the internal validation cohort, our model yielded an overall AUC of 0.989. For the external validation cohort, the model exhibited a high performance, with an AUC of 0.865. The human‒machine strategy further improved the model performance for external validation by an AUC up to 0.988. Our whole-slide-level prediction model provided an approach for dMMR/pMMR detection from H&E whole slide images with excellent predictive performance and less computer processing time in patients with CRC.

摘要

为了研究在结直肠癌(CRC)中通过苏木精和伊红(H&E)染色进行错配修复缺陷(dMMR)/错配修复功能正常(pMMR)人工智能识别领域的全切片水平预测,我们建立了一种基于分割的dMMR/pMMR深度学习检测器(SPEED)。我们的模型比基于分类的模型快约1700倍。对于内部验证队列,我们的模型总体曲线下面积(AUC)为0.989。对于外部验证队列,该模型表现出高性能,AUC为0.865。人机策略进一步将外部验证的模型性能提高到AUC高达0.988。我们的全切片水平预测模型为从CRC患者的H&E全切片图像中检测dMMR/pMMR提供了一种方法,具有出色的预测性能且计算机处理时间更短。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/066fa7cd60b9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/cecb3ba55392/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/04f7c7c474c0/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/c5d5ae30ed34/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/c699aa8e07fc/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/066fa7cd60b9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/cecb3ba55392/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/04f7c7c474c0/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/c5d5ae30ed34/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/c699aa8e07fc/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e92/10709130/066fa7cd60b9/gr4.jpg

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Cancer Cell. 2023 Sep 11;41(9):1650-1661.e4. doi: 10.1016/j.ccell.2023.08.002. Epub 2023 Aug 30.
2
Deep learning for multi-class semantic segmentation enables colorectal cancer detection and classification in digital pathology images.深度学习在多类语义分割中的应用可实现数字病理学图像中结直肠癌的检测和分类。
Sci Rep. 2023 May 24;13(1):8398. doi: 10.1038/s41598-023-35491-z.
3
Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study.
基于自监督深度学习的癌症病理切片的可泛化生物标志物预测:一项回顾性多中心研究。
Cell Rep Med. 2023 Apr 18;4(4):100980. doi: 10.1016/j.xcrm.2023.100980. Epub 2023 Mar 22.
4
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JAMA Netw Open. 2023 Feb 1;6(2):e230400. doi: 10.1001/jamanetworkopen.2023.0400.
5
Adversarial attacks and adversarial robustness in computational pathology.计算病理学中的对抗攻击和对抗鲁棒性。
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6
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