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二维电泳图谱的定量分析。

Quantitative analysis of two-dimensional electrophoretograms.

作者信息

Bossinger J, Miller M J, Vo K P, Geiduschek E P, Xuong N H

出版信息

J Biol Chem. 1979 Aug 25;254(16):7986-98.

PMID:381297
Abstract

A method for quantitative analysis of complex film density distributions in autoradiograms is described. The method is intended particularly for measuring the distribution of radioactivity among the proteins resolved by two-dimensional gel electrophoresis but should, of course, be suited to analyzing other two dimensional separations. The film density distribution is first digitized by a high speed rotating drum scanner to generate the image data array that is stored on a magnetic disk. Subsequent analysis involves: 1) data averaging, 2) detection of contours and of their locations, 3) splitting of overlapping spots, 4) conversion of film density to radioactive intensity by means of calibration films, and 5) differentiation and integration to measure the total radioactivity contained in the protein which generates a spot in the autoradiogram. The product of the analysis is a numbered contour map and a table listing coordinates and radioactivity content of each resolved spot. Coordinate transformations for comparison and matching of autoradiograms are also described. A set of utility programs print and graph the data at intermediate stages of the analysis in order to facilitate the checking of procedures and programs.

摘要

本文描述了一种用于定量分析放射自显影片中复杂胶片密度分布的方法。该方法特别适用于测量二维凝胶电泳分离出的蛋白质之间的放射性分布,但当然也适用于分析其他二维分离。胶片密度分布首先由高速旋转鼓式扫描仪数字化,以生成存储在磁盘上的图像数据阵列。后续分析包括:1)数据平均,2)轮廓及其位置的检测,3)重叠斑点的分割,4)通过校准胶片将胶片密度转换为放射性强度,5)微分和积分以测量在放射自显影片中产生斑点的蛋白质中所含的总放射性。分析的结果是一个编号的轮廓图和一个列出每个解析斑点的坐标和放射性含量的表格。还描述了用于放射自显影片比较和匹配的坐标变换。一组实用程序在分析的中间阶段打印和绘制数据,以便于检查程序和方案。

相似文献

1
Quantitative analysis of two-dimensional electrophoretograms.二维电泳图谱的定量分析。
J Biol Chem. 1979 Aug 25;254(16):7986-98.
2
Computer analysis of two-dimensional gels: semi-automatic matching.二维凝胶的计算机分析:半自动匹配
Clin Chem. 1982 Apr;28(4 Pt 2):867-75.
3
A simplified method for computer analysis of autoradiograms from two-dimensional gels.一种用于二维凝胶放射自显影片计算机分析的简化方法。
J Biol Chem. 1982 Nov 10;257(21):13144-9.
4
Some relatively simple steps toward a computer system for the analysis of two-dimensional gel-electrophoresis autoradiographs.
Clin Chem. 1982 Apr;28(4 Pt 2):932-4.
5
Computer analysis of double-labeled two-dimensional electrophoresis gels.双标记二维电泳凝胶的计算机分析
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6
Fast method for two-dimensional electrophoresis of proteins from biological samples.生物样品蛋白质二维电泳的快速方法。
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7
A novel negative imaging technique for accurate localization of stainable proteins on complex two-dimensional autoradiograms.一种用于在复杂二维放射自显影片上准确定位可染色蛋白质的新型负性成像技术。
Electrophoresis. 1997 Oct;18(11):2065-70. doi: 10.1002/elps.1150181132.
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Spot overlapping in two-dimensional polyacrylamide gel electrophoresis separations: a statistical study of complex protein maps.
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10
Improved record keeping and photography of silver-stained two-dimensional electrophoretograms by way of "XRD images".通过“X射线衍射图像”改进银染二维电泳图谱的记录保存和摄影。
Clin Chem. 1984 Dec;30(12 Pt 1):1981-4.

引用本文的文献

1
The state of the art in the analysis of two-dimensional gel electrophoresis images.二维凝胶电泳图像分析的技术现状。
Appl Microbiol Biotechnol. 2007 Oct;76(6):1223-43. doi: 10.1007/s00253-007-1128-0. Epub 2007 Aug 23.
2
Identification of proteins whose synthesis is modulated during the cell cycle of Saccharomyces cerevisiae.酿酒酵母细胞周期中合成受调控的蛋白质的鉴定。
Mol Cell Biol. 1982 Dec;2(12):1532-49. doi: 10.1128/mcb.2.12.1532-1549.1982.
3
Quantitative analysis of the heat shock response of Saccharomyces cerevisiae.
酿酒酵母热休克反应的定量分析。
J Bacteriol. 1982 Jul;151(1):311-27. doi: 10.1128/jb.151.1.311-327.1982.
4
Two-dimensional gel analysis of rat liver nuclear proteins after thyroidectomy and thyroid hormone treatment.甲状腺切除和甲状腺激素治疗后大鼠肝核蛋白的二维凝胶分析
Proc Natl Acad Sci U S A. 1981 Jul;78(7):4411-5. doi: 10.1073/pnas.78.7.4411.
5
Regulation of polypeptide synthesis during Caulobacter development: two-dimensional gel analysis.柄杆菌发育过程中多肽合成的调控:二维凝胶分析
J Bacteriol. 1981 Oct;148(1):163-73. doi: 10.1128/jb.148.1.163-173.1981.
6
Human lymphocyte polymorphisms detected by quantitative two-dimensional electrophoresis.通过定量二维电泳检测的人类淋巴细胞多态性。
Am J Hum Genet. 1983 Sep;35(5):827-37.
7
Computer-based image analysis of one-dimensional electrophoretic gels used for the separation of DNA restriction fragments.用于分离DNA限制性片段的一维电泳凝胶的计算机图像分析。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):473-91. doi: 10.1093/nar/12.1part2.473.
8
"Footprint" titrations yield valid thermodynamic isotherms.“足迹”滴定法可得出有效的热力学等温线。
Proc Natl Acad Sci U S A. 1986 Nov;83(22):8462-6. doi: 10.1073/pnas.83.22.8462.
9
A response of protein synthesis to temperature shift in the yeast Saccharomyces cerevisiae.酿酒酵母中蛋白质合成对温度变化的反应。
Proc Natl Acad Sci U S A. 1979 Oct;76(10):5222-5. doi: 10.1073/pnas.76.10.5222.