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From slides to insights: Harnessing deep learning for prognostic survival prediction in human colorectal cancer histology.

作者信息

Verma Jyoti, Sandhu Archana, Popli Renu, Kumar Rajeev, Khullar Vikas, Kansal Isha, Sharma Ashutosh, Garg Kanwal, Kashyap Neeru, Aurangzeb Khursheed

机构信息

Department of Computer Science and Engineering, Punjabi University, Patiala, India.

MM Institute of Computer Technology and Business Management Maharishi Markandeshwar (Deemed to be University) Mullana-Ambala, Haryana, 134007, India.

出版信息

Open Life Sci. 2023 Dec 13;18(1):20220777. doi: 10.1515/biol-2022-0777. eCollection 2023.


DOI:10.1515/biol-2022-0777
PMID:38152577
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10751997/
Abstract

Prognostic survival prediction in colorectal cancer (CRC) plays a crucial role in guiding treatment decisions and improving patient outcomes. In this research, we explore the application of deep learning techniques to predict survival outcomes based on histopathological images of human colorectal cancer. We present a retrospective multicenter study utilizing a dataset of 100,000 nonoverlapping image patches from hematoxylin & eosin-stained histological images of CRC and normal tissue. The dataset includes diverse tissue classes such as adipose, background, debris, lymphocytes, mucus, smooth muscle, normal colon mucosa, cancer-associated stroma, and colorectal adenocarcinoma epithelium. To perform survival prediction, we employ various deep learning architectures, including convolutional neural network, DenseNet201, InceptionResNetV2, VGG16, VGG19, and Xception. These architectures are trained on the dataset using a multicenter retrospective analysis approach. Extensive preprocessing steps are undertaken, including image normalization using Macenko's method and data augmentation techniques, to optimize model performance. The experimental findings reveal promising results, demonstrating the effectiveness of deep learning models in prognostic survival prediction. Our models achieve high accuracy, precision, recall, and validation metrics, showcasing their ability to capture relevant histological patterns associated with prognosis. Visualization techniques are employed to interpret the models' decision-making process, highlighting important features and regions contributing to survival predictions. The implications of this research are manifold. The accurate prediction of survival outcomes in CRC can aid in personalized medicine and clinical decision-making, facilitating tailored treatment plans for individual patients. The identification of important histological features and biomarkers provides valuable insights into disease mechanisms and may lead to the discovery of novel prognostic indicators. The transparency and explainability of the models enhance trust and acceptance, fostering their integration into clinical practice. Research demonstrates the potential of deep learning models for prognostic survival prediction in human colorectal cancer histology. The findings contribute to the understanding of disease progression and offer practical applications in personalized medicine. By harnessing the power of deep learning and histopathological analysis, we pave the way for improved patient care, clinical decision support, and advancements in prognostic prediction in CRC.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/56097d21f8f8/j_biol-2022-0777-fig006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/ecef066c84cc/j_biol-2022-0777-ga001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/19eae0dae26d/j_biol-2022-0777-fig001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/906b85be2fba/j_biol-2022-0777-fig002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/caaa254590a6/j_biol-2022-0777-fig003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/53a64bc3bce9/j_biol-2022-0777-fig004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/dcbdcef9907d/j_biol-2022-0777-fig005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/56097d21f8f8/j_biol-2022-0777-fig006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/ecef066c84cc/j_biol-2022-0777-ga001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/19eae0dae26d/j_biol-2022-0777-fig001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/906b85be2fba/j_biol-2022-0777-fig002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/caaa254590a6/j_biol-2022-0777-fig003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/53a64bc3bce9/j_biol-2022-0777-fig004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/dcbdcef9907d/j_biol-2022-0777-fig005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fef3/10751997/56097d21f8f8/j_biol-2022-0777-fig006.jpg

相似文献

[1]
From slides to insights: Harnessing deep learning for prognostic survival prediction in human colorectal cancer histology.

Open Life Sci. 2023-12-13

[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Development and validation of a deep learning-based pathomics signature for prognosis and chemotherapy benefits in colorectal cancer: a retrospective multicenter cohort study.

Front Immunol. 2025-7-8

本文引用的文献

[1]
TRIM family contribute to tumorigenesis, cancer development, and drug resistance.

Exp Hematol Oncol. 2022-10-19

[2]
Colon cancer and colorectal cancer: Prevention and treatment by potential natural products.

Chem Biol Interact. 2022-12-1

[3]
TRIM family proteins: roles in proteostasis and neurodegenerative diseases.

Open Biol. 2022-8

[4]
PPARgamma agonism inhibits progression of premalignant lesions in a murine lung squamous cell carcinoma model.

Int J Cancer. 2022-12-15

[5]
Lung and colon cancer classification using medical imaging: a feature engineering approach.

Phys Eng Sci Med. 2022-9

[6]
Hybrid Model for Detection of Cervical Cancer Using Causal Analysis and Machine Learning Techniques.

Comput Math Methods Med. 2022

[7]
Deep Learning on Histopathological Images for Colorectal Cancer Diagnosis: A Systematic Review.

Diagnostics (Basel). 2022-3-29

[8]
Altered Expression of TRIM Proteins - Inimical Outcome and Inimitable Oncogenic Function in Breast Cancer with Diverse Carcinogenic Hallmarks.

Curr Mol Med. 2023

[9]
TRIM29 regulates the SETBP1/SET/PP2A axis via transcription factor VEZF1 to promote progression of ovarian cancer.

Cancer Lett. 2022-3-31

[10]
Pathological Features and Prognostication in Colorectal Cancer.

Curr Oncol. 2021-12-13

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