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应用化学生物学方法鉴定 -亚硝基辅酶 A 介导的 -亚硝化作用的蛋白质靶标

Identification of Protein Targets of -Nitroso-Coenzyme A-Mediated -Nitrosation Using Chemoproteomics.

机构信息

Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States.

Department of Biochemistry, Program in Chemical Biology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.

出版信息

ACS Chem Biol. 2024 Jan 19;19(1):193-207. doi: 10.1021/acschembio.3c00654. Epub 2023 Dec 30.

Abstract

-Nitrosation is a cysteine post-translational modification fundamental to cellular signaling. This modification regulates protein function in numerous biological processes in the nervous, cardiovascular, and immune systems. Small molecule or protein nitrosothiols act as mediators of NO signaling by transferring the NO group (formally NO) to a free thiol on a target protein through a transnitrosation reaction. The protein targets of specific transnitrosating agents and the extent and functional effects of -nitrosation on these target proteins have been poorly characterized. -nitroso-coenzyme A (CoA-SNO) was recently identified as a mediator of endogenous -nitrosation. Here, we identified direct protein targets of CoA-SNO-mediated transnitrosation using a competitive chemical-proteomic approach that quantified the extent of modification on 789 cysteine residues in response to CoA-SNO. A subset of cysteines displayed high susceptibility to modification by CoA-SNO, including previously uncharacterized sites of -nitrosation. We further validated and functionally characterized the functional effects of -nitrosation on the protein targets phosphofructokinase (platelet type), ATP citrate synthase, and ornithine aminotransferase.

摘要

亚硝基化是一种半胱氨酸翻译后修饰,对细胞信号转导至关重要。这种修饰调节神经、心血管和免疫系统中许多生物学过程中的蛋白质功能。小分子或蛋白质亚硝硫醇作为 NO 信号转导的介质,通过将 NO 基团(正式命名为 NO)通过 transnitrosation 反应转移到靶蛋白上的游离巯基上来发挥作用。特定的 transnitrosating 试剂的靶蛋白以及 -nitrosation 对这些靶蛋白的程度和功能影响尚未得到很好的描述。最近发现辅酶 A(CoA-SNO)是内源性 -nitrosation 的介导物。在这里,我们使用竞争性化学蛋白质组学方法鉴定了 CoA-SNO 介导的 transnitrosation 的直接蛋白质靶标,该方法定量测定了 CoA-SNO 响应下 789 个半胱氨酸残基的修饰程度。包括先前未表征的 -nitrosation 位点在内的一组半胱氨酸显示出对 CoA-SNO 修饰的高度敏感性。我们进一步验证并功能表征了磷酸果糖激酶(血小板型)、三磷酸柠檬酸合酶和鸟氨酸转氨酶等蛋白质靶标的 -nitrosation 的功能影响。

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