Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, India.
Protein Sci. 2024 Feb;33(2):e4893. doi: 10.1002/pro.4893.
Integral membrane enzymes play essential roles in a plethora of biochemical processes. The fatty acid desaturases (FADS)-like superfamily is an important group of integral membrane enzymes that catalyze a wide array of reactions, including hydroxylation, desaturation, and cyclization; however, due to the membrane-bound nature, the majority of these enzymes have remained poorly understood. UndB is a member of the FADS-like superfamily, which catalyzes fatty acid decarboxylation, a chemically challenging reaction at the membrane interface. UndB reaction produces terminal olefins that are prominent biofuel candidates and building blocks of polymers with widespread industrial applications. Despite the great importance of UndB for several biotechnological applications, the enzyme has eluded comprehensive investigation. Here, we report details of the expression, solubilization, and purification of several constructs of UndB to achieve the optimally functional enzyme. We gained important insights into the biochemical, biophysical, and catalytic properties of UndB, including the thermal stability and factors influencing the enzyme activity. Additionally, we established the ability and kinetics of UndB to produce dienes by performing di-decarboxylation of diacids. We found that the reaction proceeds by forming a mono-carboxylic acid intermediate. Our findings shed light on the unexplored biochemical properties of the UndB and extend opportunities for its rigorous mechanistic and structural characterization.
整合膜酶在众多生化过程中发挥着重要作用。脂肪酸去饱和酶(FADS)样超家族是一类重要的整合膜酶,可催化多种反应,包括羟化、去饱和和环化;然而,由于其膜结合的性质,这些酶中的大多数仍然知之甚少。UndB 是 FADS 样超家族的成员,可催化脂肪酸脱羧,这是在膜界面上具有挑战性的化学反应。UndB 反应产生的末端烯烃是有前途的生物燃料候选物,也是具有广泛工业应用的聚合物的构建块。尽管 UndB 对许多生物技术应用具有重要意义,但该酶仍未得到全面研究。在这里,我们报告了几种 UndB 构建体的表达、可溶化解离和纯化的详细信息,以获得最佳功能的酶。我们深入了解了 UndB 的生化、生物物理和催化特性,包括热稳定性和影响酶活性的因素。此外,我们通过二酸的双脱羧作用,确定了 UndB 产生二烯的能力和动力学。我们发现反应通过形成单羧酸中间产物进行。我们的发现揭示了 UndB 未被探索的生化特性,并为其严格的机制和结构表征提供了机会。