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迈向使用拉曼显微镜进行常规有机结构测定

Towards routine organic structure determination using Raman microscopy.

作者信息

Malenfant Jason, Kuster Lucille, Gagné Yohann, Signo Kouassi, Denis Maxime, Canesi Sylvain, Frenette Mathieu

机构信息

Department of Chemistry, NanoQAM, Centre Québécois des Matériaux Fonctionnels (CQMF), Université du Québec à Montréal Montreal Quebec H3C 3P8 Canada

出版信息

Chem Sci. 2023 Nov 14;15(2):701-709. doi: 10.1039/d3sc02954a. eCollection 2024 Jan 3.

DOI:10.1039/d3sc02954a
PMID:38179529
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10763559/
Abstract

Raman microscopy can reveal a compound-specific vibrational "fingerprint" from micrograms of material with no sample preparation. We expect this increasingly available instrumentation to routinely assist synthetic chemists in structure determination; however, interpreting the information-dense spectra can be challenging for unreported compounds. Appropriate theoretical calculations using the highly efficient rSCAN-3c method can accurately predict peak positions but are less precise in matching peak heights. To limit incorrect biases while comparing experimental and theoretical spectra, we introduce a user-friendly software that gives a match score to assist with structure determination. The capabilities and limitations of this approach are demonstrated for several proof-of-concept examples including the characterization of intermediates in the total synthesis of deoxyaspidodispermine.

摘要

拉曼显微镜可以在不进行样品制备的情况下,从微克级的材料中揭示化合物特有的振动“指纹”。我们期望这种越来越容易获得的仪器能够常规地协助合成化学家进行结构测定;然而,对于未报道的化合物,解释信息密集的光谱可能具有挑战性。使用高效的rSCAN-3c方法进行适当的理论计算可以准确预测峰位,但在匹配峰高方面不太精确。为了在比较实验光谱和理论光谱时限制不正确的偏差,我们引入了一种用户友好的软件,该软件给出匹配分数以协助结构测定。通过几个概念验证示例展示了这种方法的能力和局限性,包括脱氧白坚木胺全合成中中间体的表征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/d2c22f3d53a9/d3sc02954a-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/098abf3353ee/d3sc02954a-f1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/6fc079e0f7fc/d3sc02954a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/6844596072e8/d3sc02954a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/0460ab79f910/d3sc02954a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/c2b860cf7710/d3sc02954a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/156c67581db6/d3sc02954a-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/d2c22f3d53a9/d3sc02954a-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/098abf3353ee/d3sc02954a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/c6daed520f7f/d3sc02954a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/6fc079e0f7fc/d3sc02954a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/6844596072e8/d3sc02954a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/0460ab79f910/d3sc02954a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/c2b860cf7710/d3sc02954a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/156c67581db6/d3sc02954a-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c469/10763559/d2c22f3d53a9/d3sc02954a-f8.jpg

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本文引用的文献

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J Org Chem. 2022 Nov 4;87(21):14274-14283. doi: 10.1021/acs.joc.2c01765. Epub 2022 Oct 10.
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Alterations in the molecular composition of COVID-19 patient urine, detected using Raman spectroscopic/computational analysis.利用拉曼光谱/计算分析检测到 COVID-19 患者尿液中分子组成的变化。
PLoS One. 2022 Jul 18;17(7):e0270914. doi: 10.1371/journal.pone.0270914. eCollection 2022.
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Synthesis of Deoxyaspidodispermine Based on a Functional Protecting Group Strategy.
基于功能保护基策略的去氧asperpidine 的合成。
Org Lett. 2022 Jul 15;24(27):4939-4942. doi: 10.1021/acs.orglett.2c01878. Epub 2022 Jul 1.
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The SHARK integral generation and digestion system.SHARK 积分生成和消化系统。
J Comput Chem. 2023 Jan 30;44(3):381-396. doi: 10.1002/jcc.26942. Epub 2022 Jun 9.
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Challenges in application of Raman spectroscopy to biology and materials.拉曼光谱在生物学和材料学应用中的挑战。
RSC Adv. 2018 Jul 20;8(46):25888-25908. doi: 10.1039/c8ra04491k. eCollection 2018 Jul 19.
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