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Miq. ex Maxim.(清风藤科)的完整叶绿体基因组及系统发育分析。

Complete chloroplast genome and phylogenetic analysis of Miq. ex Maxim. (Sabiaceae).

作者信息

Cheng Yao, Xu Xiaogang, Tong Lili, Tian Lu, Xia Chongli, Yu Xunlin

机构信息

College of Biology and the Environment, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.

State Environmental Protection Scientific Observation and Research Station for Ecology and Environment of Wuyi Mountains, Nanping, China.

出版信息

Mitochondrial DNA B Resour. 2023 Nov 27;8(11):1306-1310. doi: 10.1080/23802359.2023.2281034. eCollection 2023.

DOI:10.1080/23802359.2023.2281034
PMID:38188441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10769540/
Abstract

Miq. is a deciduous arbor and a member of Sabiaceae. It is one of the rare and protected plants with outstanding ornamental and economic value in Jiangsu, China. In addition to the resource values indicated above, there are numerous other elements that require additional research, including the chloroplast (cp) genomic information. In this work, the complete cp genome sequence of was assembled and characterized for the first time. The complete cp genome of was 159,950 base pair (bp) in length, including a large single-copy (LSC) region of 87,147 bp, a small single-copy (SSC) region of 18,015 bp, and the inverted repeats (IRs) region of 27,394 bp. It contains 131 genes, including 37 tRNA genes, eight rRNA genes, 85 protein-coding genes, and one pseudogene. The overall GC content of cp genome was 37.95%. The placement of in the phylogenetic tree constructed using the complete cp genome is largely congruent with previous studies. The clustering of is non-monophyletic, aligns more closely with existing morphological taxonomic studies, thereby enhancing the scholarly and scientific nature of this research.

摘要

米槭是一种落叶乔木,属于清风藤科。它是中国江苏具有突出观赏和经济价值的珍稀保护植物之一。除了上述资源价值外,还有许多其他因素需要进一步研究,包括叶绿体(cp)基因组信息。在这项工作中,首次组装并表征了[植物名称]的完整cp基因组序列。[植物名称]的完整cp基因组长度为159,950碱基对(bp),包括一个87,147 bp的大单拷贝(LSC)区域、一个18,015 bp的小单拷贝(SSC)区域和一个27,394 bp的反向重复(IR)区域。它包含131个基因,包括37个tRNA基因、8个rRNA基因、85个蛋白质编码基因和一个假基因。[植物名称]cp基因组的总体GC含量为37.95%。在使用完整cp基因组构建的系统发育树中,[植物名称]的位置与先前的研究基本一致。[植物名称]的聚类不是单系的,与现有的形态分类学研究更紧密地对齐,从而增强了本研究的学术性和科学性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/9a261c10e1dc/TMDN_A_2281034_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/94c3cc1a8f6a/TMDN_A_2281034_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/f459e228e0c4/TMDN_A_2281034_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/9a261c10e1dc/TMDN_A_2281034_F0003_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/94c3cc1a8f6a/TMDN_A_2281034_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/f459e228e0c4/TMDN_A_2281034_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5565/10769540/9a261c10e1dc/TMDN_A_2281034_F0003_C.jpg

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本文引用的文献

1
CPGView: A package for visualizing detailed chloroplast genome structures.CPGView:一个用于可视化详细叶绿体基因组结构的软件包。
Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
2
MAFFT-DASH: integrated protein sequence and structural alignment.MAFFT-DASH:集成蛋白质序列和结构比对。
Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. doi: 10.1093/nar/gkz342.
3
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp:一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
4
GapFiller: a de novo assembly approach to fill the gap within paired reads.GapFiller:一种从头开始的组装方法,用于填补配对读取中的缺口。
BMC Bioinformatics. 2012;13 Suppl 14(Suppl 14):S8. doi: 10.1186/1471-2105-13-S14-S8. Epub 2012 Sep 7.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.