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基于脂多糖和聚肌苷酸:聚胞苷酸刺激的加权基因共表达网络分析为理解……的血淋巴免疫反应机制提供了一组核心基因。

Weighted Gene Co-Expression Network Analysis Based on Stimulation by Lipopolysaccharides and Polyinosinic:polycytidylic Acid Provides a Core Set of Genes for Understanding Hemolymph Immune Response Mechanisms of .

作者信息

Wang Yongjie, Chen Xipan, Xu Xiaohui, Yang Jianmin, Liu Xiumei, Sun Guohua, Li Zan

机构信息

School of Agriculture, Ludong University, Yantai 264025, China.

College of Life Sciences, Yantai University, Yantai 264005, China.

出版信息

Animals (Basel). 2023 Dec 25;14(1):80. doi: 10.3390/ani14010080.

Abstract

The primary influencer of aquaculture quality in is pathogen infection. Both lipopolysaccharides (LPS) and polyinosinic:polycytidylic acid (Poly I:C) are recognized by the pattern recognition receptor (PRR) within immune cells, a system that frequently serves to emulate pathogen invasion. Hemolymph, which functions as a transport mechanism for immune cells, offers vital transcriptome information when is exposed to pathogens, thereby contributing to our comprehension of the species' immune biological mechanisms. In this study, we conducted analyses of transcript profiles under the influence of LPS and Poly I:C within a 24 h period. Concurrently, we developed a Weighted Gene Co-expression Network Analysis (WGCNA) to identify key modules and genes. Further, we carried out Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses to investigate the primary modular functions. Co-expression network analyses unveiled a series of immune response processes following pathogen stress, identifying several key modules and hub genes, including and . The invaluable genetic resources provided by our results aid our understanding of the immune response in hemolymph and will further our exploration of the molecular mechanisms of pathogen infection in mollusks.

摘要

水产养殖质量的主要影响因素是病原体感染。脂多糖(LPS)和聚肌苷酸:聚胞苷酸(Poly I:C)均可被免疫细胞内的模式识别受体(PRR)识别,该系统常用于模拟病原体入侵。血淋巴作为免疫细胞的运输机制,在暴露于病原体时可提供重要的转录组信息,从而有助于我们理解该物种的免疫生物学机制。在本研究中,我们在24小时内对LPS和Poly I:C影响下的转录谱进行了分析。同时,我们开发了加权基因共表达网络分析(WGCNA)来识别关键模块和基因。此外,我们进行了基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析,以研究主要模块功能。共表达网络分析揭示了病原体应激后的一系列免疫反应过程,确定了几个关键模块和枢纽基因,包括[具体基因名称未给出]和[具体基因名称未给出]。我们的结果提供的宝贵遗传资源有助于我们了解[具体物种未给出]血淋巴中的免疫反应,并将进一步推动我们对软体动物病原体感染分子机制的探索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14a9/10778463/85b63376021f/animals-14-00080-g001.jpg

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