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基于孵化后不同时间点的转录组分析加深了我们对[具体物种]幼体生长和发育的理解。 (注:原文中“of.”后缺少具体物种信息)

Transcriptome Profiling Based at Different Time Points after Hatching Deepened Our Understanding on Larval Growth and Development of .

作者信息

Li Zan, Bao Xiaokai, Liu Xiumei, Wang Weijun, Yang Jianmin, Zhu Xibo, Wang Shuhai

机构信息

School of Agriculture, Ludong University, Yantai 264025, China.

College of Life Sciences, Yantai University, Yantai 264005, China.

出版信息

Metabolites. 2023 Aug 8;13(8):927. doi: 10.3390/metabo13080927.

Abstract

As the quality of life improves, there is an increasing demand for nutrition-rich marine organisms like fish, shellfish, and cephalopods. To address this, artificial cultivation of these organisms is being explored along with ongoing research on their growth and development. A case in point is , a highly valued cephalopod known for its tasty meat, nutrient richness, and rapid growth rate. Despite its significance, there is a dearth of studies on the growth mechanism, particularly of its larvae. In this study, we collected larvae at 0, 4, 12, and 24 h post-hatching and conducted transcriptome profiling. Our analysis identified 4467, 5099, and 4181 differentially expressed genes (DEGs) at respective intervals, compared to the 0 h sample. We further analyzed the expression trends of these DEGs, noting a predominant trend of continuous upregulation. Functional exploration of this trend entailed GO and KEGG functional enrichment along with protein-protein interaction network analyses. We identified GLDC, DUSP14, DPF2, GNAI1, and ZNF271 as core genes, based on their high upregulation rate, implicated in larval growth and development. Similarly, CLTC, MEF2A, PPP1CB, PPP1R12A, and TJP1, marked by high protein interaction numbers, were identified as hub genes and the gene expression levels identified via RNA-seq analysis were validated through qRT-PCR. By analyzing the functions of key and core genes, we found that the ability of larvae to metabolize carbohydrates, lipids, and other energy substances during early growth may significantly improve with the growth of the larvae. At the same time, muscle related cells in larvae may develop rapidly, promoting the growth and development of larvae. Our findings provide preliminary insights into the growth and developmental mechanism of , setting the stage for more comprehensive understanding and broader research into cephalopod growth and development mechanisms.

摘要

随着生活质量的提高,人们对鱼类、贝类和头足类等营养丰富的海洋生物的需求日益增加。为了满足这一需求,人们正在探索这些生物的人工养殖方法,并对它们的生长和发育进行持续研究。一个典型的例子是 ,一种备受珍视的头足类动物,以其美味的肉质、丰富的营养和快速的生长速度而闻名。尽管它很重要,但关于其生长机制的研究却很少,尤其是其幼虫的生长机制。在本研究中,我们在孵化后0、4、12和24小时收集了 幼虫,并进行了转录组分析。与0小时的样本相比,我们的分析在各个时间间隔分别鉴定出4467、5099和4181个差异表达基因(DEG)。我们进一步分析了这些DEG的表达趋势,发现主要趋势是持续上调。对这一趋势的功能探索包括GO和KEGG功能富集以及蛋白质-蛋白质相互作用网络分析。基于它们的高上调率,我们鉴定出GLDC、DUSP14、DPF₂、GNAI₁和ZNF271为核心基因,这些基因与幼虫的生长和发育有关。同样,以高蛋白相互作用数量为特征的CLTC、MEF2A、PPP1CB、PPP1R12A和TJP1被鉴定为枢纽基因,并且通过RNA-seq分析确定的基因表达水平通过qRT-PCR进行了验证。通过分析关键基因和核心基因的功能,我们发现 幼虫在早期生长过程中代谢碳水化合物、脂质和其他能量物质的能力可能会随着幼虫的生长而显著提高。同时, 幼虫中的肌肉相关细胞可能会迅速发育,促进幼虫的生长和发育。我们的研究结果为 的生长和发育机制提供了初步见解,为更全面地了解和更广泛地研究头足类动物的生长和发育机制奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b04/10456336/461ab9a5cf16/metabolites-13-00927-g001.jpg

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