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变分对密度泛函理论:在蛋白质尺度上处理强关联

Variational Pair-Density Functional Theory: Dealing with Strong Correlation at the Protein Scale.

作者信息

Scott Mikael, Rodrigues Gabriel L S, Li Xin, Delcey Mickael G

机构信息

Division of Theoretical Chemistry and Biology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden.

PDC Center for High Performance Computing, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden.

出版信息

J Chem Theory Comput. 2024 Mar 26;20(6):2423-2432. doi: 10.1021/acs.jctc.3c01240. Epub 2024 Jan 13.

DOI:10.1021/acs.jctc.3c01240
PMID:38217859
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10976634/
Abstract

Multiconfigurational pair-density functional theory (MC-PDFT) offers a promising solution to the challenges faced by traditional density functional theory (DFT) in addressing molecular systems containing transition metals, open-shells, or strong correlations in general. By utilizing both the density and on-top pair-density, MC-PDFT can make use of a more flexible multiconfigurational wave function to capture the necessary static correlation, while the pair-density functional also includes the effect of dynamic correlation. So far, MC-PDFT has been used after a multiconfigurational self-consistent field (MCSCF) step, using the orbitals and configuration interaction coefficients from the converged MCSCF wave function to compute PDFT energies and properties. Here, instead, we propose to perform a direct optimization of the wave function using the pair-density functionals, resulting in a variational formulation of MC-PDFT. We derive the expressions for the wave function gradient and illustrate their similarity to standard MCSCF equations. Furthermore, we illustrate the accuracy on a set of singlet-triplet gaps as well as dissociation curves. Our findings highlight one of MC-PDFT's standout features: a reduced dependency on the active space size compared to conventional multiconfigurational wave function methodologies. Additionally, we show that the computational cost of MC-PDFT is potentially lower than MCSCF and often on-par with standard Kohn-Sham DFT, which is demonstrated by performing a MC-PDFT calculation of the entire ferredoxin protein with 1447 atoms and nearly 12 000 basis functions.

摘要

多组态对密度泛函理论(MC-PDFT)为传统密度泛函理论(DFT)在处理包含过渡金属、开壳层或一般强关联的分子体系时所面临的挑战提供了一个很有前景的解决方案。通过同时利用密度和顶对密度,MC-PDFT可以利用更灵活的多组态波函数来捕捉必要的静态关联,而对密度泛函也包含了动态关联的影响。到目前为止,MC-PDFT是在多组态自洽场(MCSCF)步骤之后使用的,利用收敛的MCSCF波函数的轨道和组态相互作用系数来计算PDFT能量和性质。相反,在这里我们建议使用对密度泛函对波函数进行直接优化,从而得到MC-PDFT的变分形式。我们推导了波函数梯度的表达式,并说明了它们与标准MCSCF方程的相似性。此外,我们还展示了在一组单重态-三重态能隙以及解离曲线上的准确性。我们的研究结果突出了MC-PDFT的一个显著特点:与传统的多组态波函数方法相比,它对活性空间大小的依赖性降低。此外,我们表明MC-PDFT的计算成本可能低于MCSCF,并且通常与标准的Kohn-Sham DFT相当,这通过对含有1447个原子和近12000个基函数的整个铁氧化还原蛋白进行MC-PDFT计算得到了证明。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/fea7f758d1be/ct3c01240_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/802635e09b7b/ct3c01240_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/c37b2f989e46/ct3c01240_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/7043c713a266/ct3c01240_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/e40358c0816d/ct3c01240_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/c652e00cfb09/ct3c01240_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/fea7f758d1be/ct3c01240_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/802635e09b7b/ct3c01240_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/c37b2f989e46/ct3c01240_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/7043c713a266/ct3c01240_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/e40358c0816d/ct3c01240_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/c652e00cfb09/ct3c01240_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29af/10976634/fea7f758d1be/ct3c01240_0006.jpg

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