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从临床样本中分离出的新种和新种。

sp. nov. and sp. nov. Isolated from Clinical Samples.

作者信息

Kabtani Jihane, Boulanouar Fatima, Gaye Papa Mouhamadou, Militello Muriel, Ranque Stéphane

机构信息

IHU Méditerranée Infection, 13005 Marseille, France.

MEPHI, SSA, IRD, AP-HM, Aix-Marseille Université, 13005 Marseille, France.

出版信息

J Fungi (Basel). 2024 Jan 13;10(1):64. doi: 10.3390/jof10010064.

Abstract

Mucormycosis is known to be a rare opportunistic infection caused by fungal organisms belonging to the order, which includes the species. These moulds are rarely involved in clinical diseases and are generally seen as contaminants in clinical laboratories. However, in recent years, case reports of human infections due to have increased, especially in immunocompromised hosts. In this study, we described two new species, which were isolated from human nails and sputum samples from two different patients. We used several methods for genomic and phenotypic characterisation. The phenotypic analysis relied on the morphological features, analysed both by optical and scanning electron microscopy. We used matrix-assisted laser desorption-ionization time-of-flight mass spectrometry, energy-dispersive X-ray spectroscopy, and BiologTM technology to characterise the proteomic, chemical mapping, and carbon source assimilation profiles, respectively. The genomic analysis relied on a multilocus DNA sequence analysis of the rRNA internal transcribed spacers and D1/D2 large subunit domains, fragments of the translation elongation factor-1 alpha, and the β-tubulin genes. The two novel species in the genus , namely PMMF0073 and PMMF0107, presented a similar morphology: irregular branched and aseptate hyphae with ribbon-like aspects and terminal vesicles at the apices all surrounded by cylindrical merosporangia. However, each species displayed distinct phenotypic and genotypic features. For example, PMMF0107 was able to assimilate more carbon sources than PMMF0073, such as adonitol, α-methyl-D-glucoside, trehalose, turanose, succinic acid mono-methyl ester, and alaninamide. The polyphasic approach, combining the results of complementary phenotypic and genomic assays, was instrumental for describing and characterising these two new species.

摘要

毛霉病是一种由属于该目(包括该种)的真菌生物引起的罕见机会性感染。这些霉菌很少引发临床疾病,在临床实验室中通常被视为污染物。然而,近年来,由该菌引起的人类感染病例报告有所增加,尤其是在免疫功能低下的宿主中。在本研究中,我们描述了两个新的该菌种,它们分别从两名不同患者的指甲和痰液样本中分离得到。我们使用了多种方法进行基因组和表型特征分析。表型分析依赖于形态特征,通过光学显微镜和扫描电子显微镜进行分析。我们分别使用基质辅助激光解吸电离飞行时间质谱、能量色散X射线光谱和BiologTM技术来表征蛋白质组学、化学图谱和碳源同化谱。基因组分析依赖于对rRNA内部转录间隔区、D1/D2大亚基结构域、翻译延伸因子-1α片段和β-微管蛋白基因进行多位点DNA序列分析。该属中的两个新物种,即PMMF0073和PMMF0107,呈现出相似的形态:不规则分支且无隔膜的菌丝,呈带状外观,顶端有末端囊泡,所有这些都被圆柱形分生孢子囊包围。然而,每个物种都表现出独特的表型和基因型特征。例如,PMMF0107能够同化比PMMF0073更多的碳源,如阿东醇、α-甲基-D-葡萄糖苷、海藻糖、松二糖、琥珀酸单甲酯和丙氨酰胺。结合互补的表型和基因组检测结果的多相方法,有助于描述和表征这两个新的该菌种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e508/10820596/a88dac8e10d9/jof-10-00064-g007.jpg

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