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来自受烃污染北极土壤的细菌对低于冰点温度下原油的降解及菌株AR_OL41的基因组分析

Crude Oil Degradation in Temperatures Below the Freezing Point by Bacteria from Hydrocarbon-Contaminated Arctic Soils and the Genome Analysis of sp. AR_OL41.

作者信息

Semenova Ekaterina M, Tourova Tatyana P, Babich Tamara L, Logvinova Ekaterina Y, Sokolova Diyana S, Loiko Nataliya G, Myazin Vladimir A, Korneykova Maria V, Mardanov Andrey V, Nazina Tamara N

机构信息

Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, 119071 Moscow, Russia.

Institute of North Industrial Ecology Problems-Subdivision of the Federal Research Centre "Kola Science Centre of Russian Academy of Science", 184209 Apatity, Russia.

出版信息

Microorganisms. 2023 Dec 30;12(1):79. doi: 10.3390/microorganisms12010079.

Abstract

Intensive human activity in the Arctic region leads to hydrocarbon pollution of reservoirs and soils. Isolation of bacteria capable of growing at low temperatures and degrading oil and petroleum products is of scientific and practical value. The aim of this work was to study the physiology and growth in oil at temperatures below 0 °C of four strains of bacteria of the genera , , , and -previously isolated from diesel-contaminated soils of the Franz Josef Land archipelago-as well as genomic analysis of the sp. AR_OL41 strain. The studied strains grew on hydrocarbons at temperatures from -1.5 °C to 35 °C in the presence of 0-8% NaCl (/). Growth at a negative temperature was accompanied by visual changes in the size of cells as well as a narrowing of the spectrum of utilized -alkanes. The studied strains were psychrotolerant, degraded natural biopolymers (xylan, chitin) and -alkanes of petroleum, and converted phosphates into a soluble form. The ability to degrade -alkanes is rare in members of the genus . To understand how the sp. AR_OL41 strain has adapted to a cold, diesel-contaminated environment, its genome was sequenced and analyzed. The Illumina HiSeq 2500 platform was used for AR_OL41 genome strain sequencing. The genome analysis of the AR_OL41 strain showed the presence of genes encoding enzymes of -alkane oxidation, pyruvate metabolism, desaturation of membrane lipids, and the formation of exopolysaccharides, confirming the adaptation of the strain to hydrocarbon pollution and low habitat temperature. Average nucleotide identity and digital DNA-DNA hybridization values for genomes of the AR_OL41 strain with that of the phylogenetically relative DSM 22537 strain were 81.9% and 20.9%, respectively, which allows the AR_OL41 strain to be assigned to a new species of the genus . Phenomenological observations and genomic analysis indicate the possible participation of the studied strains in the self-purification of Arctic soils from hydrocarbons and their potential for biotechnological application in bioremediation of low-temperature environments.

摘要

北极地区人类活动密集导致水库和土壤受到碳氢化合物污染。分离能够在低温下生长并降解石油和石油产品的细菌具有科学和实际价值。这项工作的目的是研究先前从法兰士约瑟夫地群岛受柴油污染土壤中分离出的、、、和属的四株细菌在0°C以下温度下在油中的生理学特性和生长情况,以及对AR_OL41菌株进行基因组分析。所研究的菌株在0-8%NaCl(/)存在的情况下,于-1.5°C至35°C的温度下在碳氢化合物上生长。在负温度下生长伴随着细胞大小的明显变化以及所利用的 - 烷烃谱的变窄。所研究的菌株具有耐冷性,能降解天然生物聚合物(木聚糖、几丁质)和石油的 - 烷烃,并将磷酸盐转化为可溶形式。降解 - 烷烃的能力在属成员中很少见。为了解AR_OL41菌株如何适应寒冷、受柴油污染的环境,对其基因组进行了测序和分析。使用Illumina HiSeq 2500平台对AR_OL41基因组菌株进行测序。AR_OL41菌株的基因组分析表明存在编码 - 烷烃氧化酶、丙酮酸代谢、膜脂去饱和以及胞外多糖形成的基因,证实了该菌株对碳氢化合物污染和低栖息地温度的适应性。AR_OL41菌株基因组与系统发育相关的DSM 22537菌株基因组的平均核苷酸同一性和数字DNA - DNA杂交值分别为81.9%和20.9%,这使得AR_OL41菌株可被归为属的一个新物种。现象学观察和基因组分析表明,所研究的菌株可能参与北极土壤中碳氢化合物的自净过程,以及它们在低温环境生物修复中的生物技术应用潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f447/10818417/9d997b4fea0e/microorganisms-12-00079-g001.jpg

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