Zhao Qiqi, Ren Wenhui, Zhu Huifei, Wu Qiuzhen, Zhang Chunyu, Xu Xiaoqiong, Luo Binbin, Huang Yuji, Chen Yukun, Lin Yuling, Lai Zhongxiong
Institute of Horticultural Plant Bioengineering, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian, China.
Sheng Wu Gong Cheng Xue Bao. 2024 Jan 25;40(1):190-210. doi: 10.13345/j.cjb.230191.
The Spt-Ada-Gcn5-acetyltransferase (SAGA) is an ancillary transcription initiation complex which is highly conserved. The ADA1 (alteration/deficiency in activation 1, also called histone H2A functional interactor 1, HFI1) is a subunit in the core module of the SAGA protein complex. ADA1 plays an important role in plant growth and development as well as stress resistance. In this paper, we performed genome-wide identification of banana gene family members based on banana genomic data, and analyzed the basic physicochemical properties, evolutionary relationships, selection pressure, promoter -acting elements, and its expression profiles under biotic and abiotic stresses. The results showed that there were 10, 6, and 7 family members in , and . The members were all unstable and hydrophilic proteins, and only contained the conservative SAGA-Tad1 domain. Both MaADA1 and MbADA1 have interactive relationship with Sgf11 (SAGA-associated factor 11) of core module in SAGA. Phylogenetic analysis revealed that banana gene family members could be divided into 3 classes. The evolution of gene family members was mostly influenced by purifying selection. There were large differences among the gene structure of banana gene family members. gene family members contained plenty of hormonal elements. may play a prominent role in the resistance of banana to cold stress, while may respond to the Panama disease of banana. In conclusion, this study suggested gene family members are highly conserved in banana, and may respond to biotic and abiotic stress.
Spt-Ada-Gcn5-乙酰转移酶(SAGA)是一种高度保守的辅助转录起始复合物。ADA1(激活改变/缺陷1,也称为组蛋白H2A功能相互作用因子1,HFI1)是SAGA蛋白复合物核心模块中的一个亚基。ADA1在植物生长发育以及抗逆性中发挥着重要作用。本文基于香蕉基因组数据对香蕉ADA基因家族成员进行了全基因组鉴定,并分析了其基本理化性质、进化关系、选择压力、启动子作用元件以及在生物和非生物胁迫下的表达谱。结果表明,MaADA、MbADA和McADA基因家族分别有10、6和7个成员。这些成员均为不稳定的亲水性蛋白,且仅含有保守的SAGA-Tad1结构域。MaADA1和MbADA1均与SAGA核心模块中的Sgf11(SAGA相关因子11)存在相互作用关系。系统发育分析表明,香蕉ADA基因家族成员可分为3类。ADA基因家族成员的进化主要受纯化选择影响。香蕉ADA基因家族成员的基因结构存在较大差异。ADA基因家族成员含有大量激素元件。MaADA可能在香蕉抗冷胁迫中发挥重要作用,而MbADA可能对香蕉巴拿马病作出响应。总之,本研究表明香蕉ADA基因家族成员高度保守,可能对生物和非生物胁迫作出响应。