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竞争驱动的生态进化反馈重塑了噬菌体 λ 的适应度景观,并使其能够实现物种形成。

Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation.

机构信息

Department of Medicine, Division of Infectious Diseases and Global Public Health, University of California San Diego, San Diego, CA, USA.

Department of Ecology, Behavior and Evolution, University of California San Diego, San Diego, CA, USA.

出版信息

Nat Commun. 2024 Jan 29;15(1):863. doi: 10.1038/s41467-024-45008-5.

Abstract

A major challenge in evolutionary biology is explaining how populations navigate rugged fitness landscapes without getting trapped on local optima. One idea illustrated by adaptive dynamics theory is that as populations adapt, their newly enhanced capacities to exploit resources alter fitness payoffs and restructure the landscape in ways that promote speciation by opening new adaptive pathways. While there have been indirect tests of this theory, to our knowledge none have measured how fitness landscapes deform during adaptation, or test whether these shifts promote diversification. Here, we achieve this by studying bacteriophage [Formula: see text], a virus that readily speciates into co-existing receptor specialists under controlled laboratory conditions. We use a high-throughput gene editing-phenotyping technology to measure [Formula: see text]'s fitness landscape in the presence of different evolved-[Formula: see text] competitors and find that the fitness effects of individual mutations, and their epistatic interactions, depend on the competitor. Using these empirical data, we simulate [Formula: see text]'s evolution on an unchanging landscape and one that recapitulates how the landscape deforms during evolution. [Formula: see text] heterogeneity only evolves in the shifting landscape regime. This study provides a test of adaptive dynamics, and, more broadly, shows how fitness landscapes dynamically change during adaptation, potentiating phenomena like speciation by opening new adaptive pathways.

摘要

进化生物学的一个主要挑战是解释种群如何在不陷入局部最优的情况下穿越崎岖的适应度景观。适应度景观理论表明,随着种群的适应,其新增强的资源利用能力会改变适应度收益,并通过开辟新的适应途径来促进物种形成,从而重构景观。虽然已经有间接的理论验证,但据我们所知,还没有直接测量适应过程中适应度景观的变形,也没有验证这些变化是否促进了多样化。在这里,我们通过研究噬菌体 [Formula: see text] 来实现这一目标,这是一种在受控实验室条件下容易通过受体特化形成共存种的病毒。我们使用高通量基因编辑表型技术来测量 [Formula: see text] 在不同进化的 [Formula: see text] 竞争下的适应度景观,发现单个突变的适应度效应及其上位性相互作用取决于竞争。利用这些经验数据,我们在不变的景观和再现适应过程中景观变形的景观上模拟了 [Formula: see text] 的进化。在不断变化的景观中,只有 [Formula: see text] 的异质性得以进化。这项研究提供了对适应度景观理论的验证,更广泛地展示了适应度景观在适应过程中如何动态变化,通过开辟新的适应途径为物种形成等现象提供了可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1e9/10825149/4163497a4536/41467_2024_45008_Fig1_HTML.jpg

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