从油藏中分离出的sp. 菌株CH92的基因组序列草图。
Draft genome sequence of sp. strain CH92 isolated from oil reservoir.
作者信息
Xiang Wei, Zhang Quan, Wang Jianxin, Xue Yanfen, Yu Bo
机构信息
SINOPEC (Dalian) Research Institute of Petroleum and Petro-Chemicals Co., Ltd., Dalian, China.
Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
出版信息
Microbiol Resour Announc. 2024 Mar 12;13(3):e0106523. doi: 10.1128/mra.01065-23. Epub 2024 Feb 1.
Abstract
We report the draft genome sequence of sp. strain CH92, isolated from a high temperature oil well in Baolige oilfield, China. The estimated genome is 3.73 Mb, with 3,479 protein-coding sequences.
摘要
我们报告了从中国宝力格油田的一口高温油井中分离出的sp. 菌株CH92的基因组序列草图。估计基因组大小为3.73 Mb，含有3479个蛋白质编码序列。
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本文引用的文献
1
Degradation of long-chain n-alkanes by a novel thermal-tolerant Rhodococcus strain.
Arch Microbiol. 2022 Apr 13;204(5):259. doi: 10.1007/s00203-022-02872-3.
2
Bhargavaea massiliensis sp. nov. and Dietzia massiliensis sp. nov., Novel Bacteria Species Isolated from Human Urine Samples in Nigeria.
Curr Microbiol. 2021 Dec 14;79(1):18. doi: 10.1007/s00284-021-02721-4.
3
Fast and sensitive protein alignment using DIAMOND.
Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
6
Accelerated Profile HMM Searches.
PLoS Comput Biol. 2011 Oct;7(10):e1002195. doi: 10.1371/journal.pcbi.1002195. Epub 2011 Oct 20.
7
BLAST+: architecture and applications.
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
8
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
10
A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus.
Arch Microbiol. 1978 May 30;117(2):189-96. doi: 10.1007/BF00402307.
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