Kim-Yip Rebecca P, McNulty Ryan, Joyce Bradley, Mollica Antonio, Chen Peter J, Ravisankar Purnima, Law Benjamin K, Liu David R, Toettcher Jared E, Ivakine Evgueni A, Posfai Eszter, Adamson Britt
Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Nat Biotechnol. 2024 Dec;42(12):1822-1830. doi: 10.1038/s41587-023-02106-x. Epub 2024 Feb 6.
Using transient inhibition of DNA mismatch repair during a permissive stage of development, we demonstrate highly efficient prime editing of mouse embryos with few unwanted, local byproducts (average 58% precise edit frequency, 0.5% on-target error frequency across 13 substitution edits at 8 sites), enabling same-generation phenotyping of founders. Whole-genome sequencing reveals that mismatch repair inhibition increases off-target indels at low-complexity regions in the genome without any obvious phenotype in mice.
在发育的允许阶段使用DNA错配修复的瞬时抑制,我们证明了对小鼠胚胎进行高效的碱基编辑,产生的不需要的局部副产物很少(平均精确编辑频率为58%,在8个位点的13个替换编辑中,靶向错误频率为0.5%),从而能够对 founders 进行同代表型分析。全基因组测序表明,错配修复抑制会增加基因组中低复杂度区域的脱靶插入缺失,但在小鼠中没有任何明显的表型。