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Identification of pyroptosis-associated genes with diagnostic value in calcific aortic valve disease.

作者信息

Yu Chenxi, Zhang Yifeng, Yang Ling, Aikebaier Mirenuer, Shan Shuyao, Zha Qing, Yang Ke

机构信息

Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China.

Department of Cardiology, Shanghai Ninth People's Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China.

出版信息

Front Cardiovasc Med. 2024 Jan 25;11:1340199. doi: 10.3389/fcvm.2024.1340199. eCollection 2024.


DOI:10.3389/fcvm.2024.1340199
PMID:38333413
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10850341/
Abstract

BACKGROUND: Calcific aortic valve disease (CAVD) is one of the most prevalent valvular diseases and is the second most common cause for cardiac surgery. However, the mechanism of CAVD remains unclear. This study aimed to investigate the role of pyroptosis-related genes in CAVD by performing comprehensive bioinformatics analysis. METHODS: Three microarray datasets (GSE51472, GSE12644 and GSE83453) and one RNA sequencing dataset (GSE153555) were obtained from the Gene Expression Omnibus (GEO) database. Pyroptosis-related differentially expressed genes (DEGs) were identified between the calcified and the normal valve samples. LASSO regression and random forest (RF) machine learning analyses were performed to identify pyroptosis-related DEGs with diagnostic value. A diagnostic model was constructed with the diagnostic candidate pyroptosis-related DEGs. Receiver operating characteristic (ROC) curve analysis was performed to estimate the diagnostic performances of the diagnostic model and the individual diagnostic candidate genes in the training and validation cohorts. CIBERSORT analysis was performed to estimate the differences in the infiltration of the immune cell types. Pearson correlation analysis was used to investigate associations between the diagnostic biomarkers and the immune cell types. Immunohistochemistry was used to validate protein concentration. RESULTS: We identified 805 DEGs, including 319 down-regulated genes and 486 up-regulated genes. These DEGs were mainly enriched in pathways related to the inflammatory responses. Subsequently, we identified 17 pyroptosis-related DEGs by comparing the 805 DEGs with the 223 pyroptosis-related genes. LASSO regression and RF algorithm analyses identified three CAVD diagnostic candidate genes (TREM1, TNFRSF11B, and PGF), which were significantly upregulated in the CAVD tissue samples. A diagnostic model was constructed with these 3 diagnostic candidate genes. The diagnostic model and the 3 diagnostic candidate genes showed good diagnostic performances with AUC values >0.75 in both the training and the validation cohorts based on the ROC curve analyses. CIBERSORT analyses demonstrated positive correlation between the proportion of M0 macrophages in the valve tissues and the expression levels of TREM1, TNFRSF11B, and PGF. CONCLUSION: Three pyroptosis-related genes (TREM1, TNFRSF11B and PGF) were identified as diagnostic biomarkers for CAVD. These pyroptosis genes and the pro-inflammatory microenvironment in the calcified valve tissues are potential therapeutic targets for alleviating CAVD.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/c40c95f944f3/fcvm-11-1340199-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/8662fc7f9ac3/fcvm-11-1340199-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/296f94f2f8d7/fcvm-11-1340199-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/789c42813f1d/fcvm-11-1340199-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/530a60722735/fcvm-11-1340199-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/204502ef9775/fcvm-11-1340199-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/803c4777c435/fcvm-11-1340199-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/f0414b70097b/fcvm-11-1340199-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/a073de946750/fcvm-11-1340199-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/cad4afd702d9/fcvm-11-1340199-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/65d2f3f87c68/fcvm-11-1340199-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/c40c95f944f3/fcvm-11-1340199-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/8662fc7f9ac3/fcvm-11-1340199-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/296f94f2f8d7/fcvm-11-1340199-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/789c42813f1d/fcvm-11-1340199-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/530a60722735/fcvm-11-1340199-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/204502ef9775/fcvm-11-1340199-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/803c4777c435/fcvm-11-1340199-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/f0414b70097b/fcvm-11-1340199-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/a073de946750/fcvm-11-1340199-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/cad4afd702d9/fcvm-11-1340199-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/65d2f3f87c68/fcvm-11-1340199-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86e4/10850341/c40c95f944f3/fcvm-11-1340199-g011.jpg

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引用本文的文献

[1]
Identification and analysis of pyroptosis-related key genes in heart failure.

J Cardiothorac Surg. 2025-7-14

[2]
Identification and Exploration of Pyroptosis-Related Genes in Macrophage Cells Reveal Necrotizing Enterocolitis Heterogeneity Through Single-Cell and Bulk-Sequencing.

Int J Mol Sci. 2025-4-24

[3]
Analysis of cellular senescence-related genes in calcified aortic valve disease and the potential therapeutic role of β-Carotene.

PLoS One. 2025-3-10

[4]
Construction of the bromodomain-containing protein-associated prognostic model in triple-negative breast cancer.

Cancer Cell Int. 2025-1-18

[5]
Exploring the role of pyroptosis in the pathogenicity of heart disease.

Front Physiol. 2024-4-5

本文引用的文献

[1]
Bioinformatic analysis of underlying mechanisms of Kawasaki disease via Weighted Gene Correlation Network Analysis (WGCNA) and the Least Absolute Shrinkage and Selection Operator method (LASSO) regression model.

BMC Pediatr. 2023-2-24

[2]
Calcific aortic valve disease: mechanisms, prevention and treatment.

Nat Rev Cardiol. 2023-8

[3]
GSDME-mediated pyroptosis promotes the progression and associated inflammation of atherosclerosis.

Nat Commun. 2023-2-18

[4]
Signatures and prognostic values of related immune targets in tongue cancer.

Front Surg. 2023-1-4

[5]
The Mechanism of Osteoprotegerin-Induced Osteoclast Pyroptosis In Vitro.

Int J Mol Sci. 2023-1-12

[6]
Inflammasome activation mediated by oxidised low-density lipoprotein in patients with sleep apnoea and early subclinical atherosclerosis.

Eur Respir J. 2023-3

[7]
Involvement of pyroptosis pathway in epicardial adipose tissue - myocardium axis in experimental heart failure with preserved ejection fraction.

Biochem Biophys Res Commun. 2022-12-25

[8]
A novel anti-atherosclerotic mechanism of quercetin: Competitive binding to KEAP1 via Arg483 to inhibit macrophage pyroptosis.

Redox Biol. 2022-11

[9]
Integrated identification of key immune related genes and patterns of immune infiltration in calcified aortic valvular disease: A network based meta-analysis.

Front Genet. 2022-9-21

[10]
TREM-1 induces pyroptosis in cardiomyocytes by activating NLRP3 inflammasome through the SMC4/NEMO pathway.

FEBS J. 2023-3

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