College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
University Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Int J Mol Sci. 2024 Jan 25;25(3):1452. doi: 10.3390/ijms25031452.
PIN-formed (PIN) proteins-specific transcription factors that are widely distributed in plants-play a pivotal role in regulating polar auxin transport, thus influencing plant growth, development, and abiotic stress responses. Although the identification and functional validation of genes have been extensively explored in various plant species, their understanding in woody plants-particularly the endangered species (Hemsl.) Yang-remains limited. is an economically significant tree species that is endemic to southern China. For this study, we employed bioinformatics approaches to screen and identify 13 members of the gene family in . Through a phylogenetic analysis, we classified these genes into five sub-families: A, B, C, D, and E. Furthermore, we conducted a comprehensive analysis of the physicochemical properties, three-dimensional structures, conserved motifs, and gene structures of the PbPIN proteins. Our results demonstrate that all genes consist of exons and introns, albeit with variations in their number and length, highlighting the conservation and evolutionary changes in genes. The results of our collinearity analysis indicate that the expansion of the gene family primarily occurred through segmental duplication. Additionally, by predicting cis-acting elements in their promoters, we inferred the potential involvement of genes in plant hormone and abiotic stress responses. To investigate their expression patterns, we conducted a comprehensive expression profiling of genes in different tissues. Notably, we observed differential expression levels of s across the various tissues. Moreover, we examined the expression profiles of five representative genes under abiotic stress conditions, including heat, cold, salt, and drought stress. These experiments preliminarily verified their responsiveness and functional roles in mediating responses to abiotic stress. In summary, this study systematically analyzes the expression patterns of genes and their response to abiotic stresses in using whole-genome data. Our findings provide novel insights and valuable information for stress tolerance regulation in . Moreover, the study offers significant contributions towards unraveling the functional characteristics of the gene family.
PIN 形成(PIN)蛋白特异性转录因子广泛分布于植物中,在调节极性生长素运输方面发挥着关键作用,从而影响植物的生长、发育和非生物胁迫响应。尽管已经在各种植物物种中广泛探索了基因的鉴定和功能验证,但在木本植物中——特别是濒危物种(Hemsl.)杨-的理解仍然有限。是中国南方特有的一种具有经济重要性的树种。在本研究中,我们采用生物信息学方法筛选和鉴定了中的 13 个基因家族成员。通过系统发育分析,我们将这些基因分为五个亚家族:A、B、C、D 和 E。此外,我们对 PbPIN 蛋白的理化性质、三维结构、保守基序和基因结构进行了全面分析。我们的结果表明,所有基因都由外显子和内含子组成,尽管它们的数量和长度存在差异,这突出了基因的保守性和进化变化。我们的共线性分析结果表明,基因家族的扩张主要通过片段复制发生。此外,通过预测其启动子中的顺式作用元件,我们推断基因可能参与植物激素和非生物胁迫响应。为了研究它们的表达模式,我们对不同组织中的基因进行了全面的表达谱分析。值得注意的是,我们观察到不同组织中基因的表达水平存在差异。此外,我们还研究了五个代表性基因在非生物胁迫条件下的表达谱,包括热、冷、盐和干旱胁迫。这些实验初步验证了它们在介导非生物胁迫响应中的响应能力和功能作用。综上所述,本研究系统分析了基因在全基因组数据中的表达模式及其对的非生物胁迫响应。我们的发现为调控中的胁迫耐受性提供了新的见解和有价值的信息。此外,该研究为揭示基因家族的功能特征做出了重要贡献。