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在干旱和水涝胁迫下对 中的 WRKY 基因家族进行全面表达分析。

Comprehensive Expression Analysis of the WRKY Gene Family in under Drought and Waterlogging Stresses.

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2024 Jul 2;25(13):7280. doi: 10.3390/ijms25137280.

DOI:10.3390/ijms25137280
PMID:39000387
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11242546/
Abstract

In response to biotic and abiotic stresses, the WRKY gene family plays a crucial role in plant growth and development. This study focused on and involved genome-wide identification of WRKY gene family members, clarification of their molecular evolutionary characteristics, and comprehensive mapping of their expression profiles under diverse abiotic stress conditions. A total of 60 WRKY gene family members were identified, and their phylogenetic classification revealed three distinct groups. A conserved motif analysis underscored the significant conservation of motif 1 and motif 2 among the majority of proteins, with proteins within the same class sharing analogous gene structures. Furthermore, an examination of cis-acting elements and protein interaction networks revealed several genes implicated in abiotic stress responses in . Transcriptomic data were utilized to analyze the expression patterns of WRKY family members under drought and waterlogged conditions, with subsequent validation by quantitative real-time PCR (RT-qPCR) experiments. Notably, exhibited significant expression modulation under drought stress; responded prominently to waterlogging stress; and , , and demonstrated altered expression under both drought and waterlogging stresses. This study revealed the candidate genes that potentially play a pivotal role in enhancing abiotic stress resilience in . The findings have provided valuable insights and knowledge that can guide further research aimed at understanding and addressing the impacts of abiotic stress within this species.

摘要

针对生物和非生物胁迫,WRKY 基因家族在植物生长和发育中起着至关重要的作用。本研究聚焦于 ,并涉及 WRKY 基因家族成员的全基因组鉴定、其分子进化特征的阐明以及在各种非生物胁迫条件下其表达谱的综合映射。总共鉴定了 60 个 WRKY 基因家族成员,其系统发育分类揭示了三个不同的组。保守基序分析强调了 motif 1 和 motif 2 在大多数 蛋白中的显著保守性,同一类中的蛋白质具有类似的基因结构。此外,对顺式作用元件和蛋白质相互作用网络的检查揭示了 中几个涉及非生物胁迫反应的基因。利用转录组数据分析 WRKY 家族成员在干旱和水淹条件下的表达模式,并通过定量实时 PCR (RT-qPCR) 实验进行后续验证。值得注意的是, 在干旱胁迫下表现出显著的表达调控; 在水淹胁迫下响应明显; 、 、和 则在干旱和水淹胁迫下表现出改变的表达。本研究揭示了 候选基因,它们可能在增强 对非生物胁迫的适应能力中发挥关键作用。这些发现为进一步研究该物种的非生物胁迫影响提供了有价值的见解和知识。

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